Beast code in Giters

Grigory Sharov's repositories

3DEM-conventions

Conventions for 3DEM software packages

Language:PythonGPL-3.019 10

MDCatch

Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing

Language:PythonGPL-3.09 2 21

EMAN

Scripts for EMAN2

Language:ShellGPL-3.05 1 1

SerialEM

Some scripts for SerialEM

GPL-3.05 30

pytemscript

Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.

Language:PythonNOASSERTION4 2 1

Relion

Scripts for Relion 1.2+

Language:MATLABGPL-3.03 2 1

relion-external-jobs

Python scripts for Relion external job type

Language:PythonGPL-3.03 30

other

Other bash scripts

Language:ShellGPL-3.02 1 5

fsc3D

These are programs that deal with anisotropy (both resolution and sampling)

Language:PythonMIT1 1 2

perfectem

Run TEM performance tests with SerialEM

Language:PythonGPL-3.0100

tomo-scripts

Scripts for tomography and subtomogram averaging

Language:ShellGPL-3.01 10

EPU_group_AFIS

Makes RELION 3.1+ Optics Groups from EPU AFIS data

Language:Jupyter NotebookMIT000

Imagic

Scripts for IMAGIC-4D

Language:ShellGPL-3.0010

MeasureIce

A tool for measuring ice thickness in cryo-EM

Language:PythonGPL-3.0010

scipion-em-plugins

Repo to group many Scipion plugins for development

GPL-3.0010

Simple2.0

Scripts adapted from http://simple.stanford.edu/

Language:PerlGPL-3.0010

SmartScope

SmartScope is a framework for systematic evaluation of cryo-EM specimens

Language:HTMLNOASSERTION010

SPIDER

Collection of spider scripts

Language:ShellGPL-3.0010

TFS_EPU_parser

Parse EPU sessions

Language:PythonGPL-3.0010

XMIPP

Scripts for XMIPP 2.4 and 3.1

Language:ShellGPL-3.0010