particle-picking

There are 0 repository under particle-picking topic.

• tbepler / topaz

  Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

  cryoemparticle-pickingmachine-learningcnnpositive-unlabeledobject-detectionpytorchtopaztopaz-denoisedenoisingcryo-emtopaz-em
  Language:Jupyter Notebook 168
• TomoBEAR

  KudryashevLab / TomoBEAR

  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

  cryo-emcryoemcryo-etcryoetprocessingpipelinestructural-biologyparallelcluster-computingparallel-computingclustertememettomographyreconstructionautomatedalignmentparticle-pickingtemplate-matching
  Language:MATLAB 26

• MPI-Dortmund / tomotwin-cryoet

  cryo-ET particle picking by representation and metric learning

  cryo-emmetric-learningcryo-etdeep-learningparticle-picking
  Language:Python 26

• logicvay2010 / TomoNet

  TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing

  cryo-etparticle-pickingsubtomogram-averaging
  Language:Python 11

• ShkolniskyLab / kltpicker

  KLT picker: Particle picking using data-driven optimal templates (Python version)

  particle-pickingelectron-microscopycryoem
  Language:Python 6

• ccameron / REPIC

  REliable PIcking by Consensus (REPIC) - an ensemble learning methodology for cryo-EM particle picking

  ensemble-learningcryo-emgraph-theoryinteger-linear-programmingparticle-picking
  Language:Python 3

• nextpyp / cet_pick

  Cellular content mining and particle localization

  cryo-etdeep-learningimage-analysisparticle-picking
  Language:Python 2

• nextpyp / spr_pick

  2D NN-based particle picking from sparse labels

  cryo-emcryo-etdeep-learningimage-analysisparticle-picking
  Language:Python 2

• sebseager / cryoem-picker-eval

  Data analysis scripts, patches, and installation guides for cryo-EM particle pickers.

  cryo-emparticle-pickingwiki
  Language:Jupyter Notebook 2

• jmarsil / pygempick

  Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).

  immunologyimmunoinformaticsimmunoglobulinimmunohistochemical-imagesimmunocytochemistrygoldparticle-pickingdiagnosticsimage-processingimage-filters
  Language:Jupyter Notebook 1

• sebseager / mrc-viewer

  Web application in Dash and Plotly.js for displaying cryo-EM micrographs and visualizing coordinate overlays.

  cryo-emdashparticle-pickingplotly
  Language:Python 0

• sebseager / REPIC

  REliable PIcking by Consensus (REPIC)

  cryo-emensemble-learninggraph-theoryinteger-linear-programmingparticle-picking
  Language:Python 0

• ShkolniskyLab / kltpicker_matlab

  KLT picker: Particle picking using data-driven optimal templates (MATLAB version)

  particle-pickingelectron-microscopycryoem
  Language:MATLAB 0

• Guillawme / topaztrainmetrics

  Plot metrics from a Topaz training run

  cryo-emcryoemtopazparticle-pickingvisualization
  Language:Python