There are 1 repository under bacterial-genome-analysis topic.
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
Genomewide Epistasis Analysis on Bacteria
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Reproducible and comprehensive sequence analyses for single-species bacterial dataset
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
R approach to analyze evolutionary phylogenomics
analyzing bacterial genome based ontologies and phylogenomics informativeness
WGS- Metasociomic- analysing bacterial social interactions in metagenomes of longitudinally collected samples of human microbiomes
Python scripts that predict and plot the location of the origin of replication (oriC) of circular bacterial genomes based on Z-curve analysis, GC-skew analysis. and certain gene locations
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
Pipeline for de novo assembly of bacterial genomes from paired-end Illumina reads
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
A Bash script that automates the search in bacterial genomes for LuxR and LuxI -like proteins. These are important components for Quorum Sensing in bacteria
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
Script to design core genome phylogeny using bacterial genome assemblies
Bacterial plasmid annotation pipeline
bacterial genome deep learning using keras
genome assembler for cleaning, mapping and assembling genomes.
genome annotation analyzer for the microbiome analysis
pangenome metagenomics normalizer for gene annotations specifically gene ontologies.
from trinity assembly to deep learning.
Medium scale identification of genomic neighbors in bacterial genomes