wgmlst

There are 0 repository under wgmlst topic.

B-UMMI / chewBBACA
BSR-Based Allele Calling Algorithm
wgmlst cgmlst mlst genomics outbreak-detection bacterial-genome-analysis allele-calling bioinformatics bacteria bacterial-typing
Language:HTML 129
tseemann / cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
cgmlst wgmlst distance-matrix
Language:C 25
BU-ISCIII / taranis
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
sequencing cgmlst wgmlst mlst bacterial-genomes outbreak-data-analysis outbreak-detection
Language:Python 6
cenesis / cano-wgMLST
A Platform for Epidemiological Investigation and Comparative Genomic Analysis
molecular-typing next-generation-sequencing wgmlst feature-selection epidemiological-investigation comparative-genomic-analysis research bioinformatics bioinformatics-pipeline
Language:Perl 2
tripitakit / mlst2dist
mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
chewbbaca distance-calculation wgmlst cgmlst mlst hamming-distance dissimilarity-matrix distance-matrix genomics
Language:Python 1