hgt
There are 1 repository under hgt topic.
- DEM.Net
dem-net / DEM.Net
Digital Elevation model library in C#. 3D terrain models, line/point Elevations, intervisibility reports
Language:C# 283 songweizhi / MetaCHIP
Horizontal gene transfer (HGT) identification pipeline
Language:Python 51Arkadiy-Garber / SprayNPray
Rapid and simple taxonomic profiling of genome and metagenome contigs
Language:Python 26- Language:Python 17
agrenott / pyhgtmap
Generate OSM contour lines from NASA SRTM (or other digital elevation model sources) data
Language:Python 10- Language:R 9
deepomicslab / LocalHGT
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
Language:Python 8jnarayan81 / Alienomics
Automated pipeline for HGT and contaminant detection in an assembled, annotated genome
Language:Perl 8A simulator for horizontal gene transfer (HGT) in microbial communities
Language:Python 8dodie / srtm-map-renderer
Java application to render SRTM data
Language:Java 5- Language:C++ 5
peterthorpe5 / Methods_M.cerasi_R.padi_genome_assembly
Methods for genome paper
Language:Shell 5- Language:Python 4
- Language:C# 3
alipirani88 / find_hgt_pipeline
compare multiple fasta files using nucmer and extract aligned fragments
Language:Python 1- Language:Rust 1
autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks
Language:Perl 1JohnLeber / HGT-To-Normal
CUDA code to create normal maps from 1 arc-second resolution HGT/SRTM1 files using the GPU.
Language:Cuda 1- Language:Go 1
ggavelis / HGT_v_Contamination_assessor
How can we discriminate contaminants from HGT? Alien indices are often used to screen out foreign sequences, but can 'overclean' by removing bona fide HGT. This script leverages metadata about each DNA/AA sequence (i.e. whether it is spliced, has a polyA tail or spliced leader), and uses that to assess the extent to which AI-based cleaning is removing legitimate HGT.
Language:Python 0gisleDK / LocalDB_with_gene_synteny
How to make a local NCBI gene database and associated tools for gene synteny analysis
Language:Ruby 0- Language:Python 0
C++ Windows application that creates relief map images from high resolution 1 arc-second HGT/SRTM1 files
Language:C++ 0New Zealand digital elevation model in 1 arc-second HGT /SRTM1 format (~30 meter resolution). Computed by interpolating contour lines from the LINZ topographical database.
0- Language:Go 0
- Language:Python 0
Sxlly / FlightSimulator
Flight Simulator Through Real World Terrain Via NASA Hgt (Height) Files and Matplotlib 3d Plot In Python 3 Using a Kivy GUI
Language:Python 0- Language:TypeScript 0
ulibuck / Geo-Elevation-HGT
Geo::Elevation::HGT - Elevation service with terrain data provided by Mapzen and Amazon AWS S3
Language:Perl 0altingia / mimeo
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Language:Pythonhandaoui-mohamed / Digital-elevation-model
Digital elevation model of Wilaya AIN TEMOUCHENTE Algeria
Language:Python
