dbespiatykh

Dmitry Bespiatykh's repositories

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples

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Web-app to explore Mycobacterium tuberculosis complex

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A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file

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Scripts and steps for making a consolidated COG database file for tools like DIAMOND.

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Targeted and Mapping-Free Variant Calling in FastQ Reads of Bacterial Genomes

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This is the development home of the Snakemake wrapper repository, see

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Tuberculosis Genomic Pipeline

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Variant detection and lineage barcoding of Mycobacterium tuberculosis

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