Peter Menzel's repositories
score-assemblies
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
ont-assembly-snake
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
packCircles
C program for space-efficiently packing circles in a plane.
taxonomy-tools
C++ tools for NCBI taxonomy tasks
download-refseq-genomes
Perl script to download genomes within a clade from NCBI Refseq
gh-actions
workflows for GitHub Actions
plot-samtools-depth
Plot output of samtools depth to postscript
illumina-assembly-snake
Snakemake wrapper for bacterial genome assembly from Illumina reads.
bioconda-recipes
Conda recipes for the bioconda channel.
dircolors-solarized
This is a repository of themes for GNU ls (configured via GNU dircolors) that support Ethan Schoonover’s Solarized color scheme.
docker-backuppc
Docker container with BackupPC version 4.x/3.x based on Alpine distribution.
docker-micromamba-shiny
A minimal example for an R Shiny app inside a Docker container using R packages via conda-forge + micromamba
open-data-registry
A registry of publicly available datasets on AWS
r-ggstatsplot-feedstock
A conda-smithy repository for r-ggstatsplot.
TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data