antimicrobial-peptides

There are 2 repositories under antimicrobial-peptides topic.

nf-core / funcscan
(Meta-)genome screening for functional and natural product gene sequences
nextflow workflow pipeline assembly contigs function screening metagenomics natural-products antimicrobial-resistance-genes antimicrobial-peptides biosynthetic-gene-clusters bioinformatics amp antibiotic-resistance arg bgc secondary-metabolites amr nf-core
Language:Nextflow 58
BioGenies / peptide-prediction-list
Collects software dedicated to predicting specific properties of peptides
awesome-list bioinformatics antimicrobial-peptides anticancer-peptides neuropeptides prediction-model peptide-identification peptides peptide-prediction cell-penetrating-peptides machine-learning deep-learning blood-brain-barrier
Language:Shell 42
szczurek-lab / hydramp
HydrAMP: a deep generative model for antimicrobial peptide discovery
antimicrobial-peptides antimicrobial-resistance drug-discovery generative-models mimuw university-of-warsaw
Language:Jupyter Notebook 28
plissonf / ML-guided-discovery-and-design-of-non-hemolytic-peptides
Classification models for hemolytic nature and hemolytic activity predictions in peptide/protein sequences
antimicrobial-peptides hemolytic-peptides qsar machine-learning-algorithms applicability-domain de-novo-design
Language:Jupyter Notebook 13
sayalaruano / AMPredST
Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides
antimicrobial-peptides bioinformatics drug-discovery machine-learning python streamlit-webapp
Language:Python 7
LinTzuTang / AI4AMP_predictor
antimicrobial-peptides deep-learning
Language:Jupyter Notebook 5
Darcy220606 / AMPcombi
AMPcombi parses and filters results from AMP prediction tools
amp antimicrobial-genes-annotation antimicrobial-peptides genes
Language:Python 4
WaqarHusain / sAMP-PFPDeep
A model for predicting short antimicrobial peptides (length <=30 residues) using multiple features and deep learning approaches
deep-learning resnet-50 vgg16 sequence-classification protien-classification antimicrobial-peptides bioinformatics
Language:Python 4
Brendan-P-Moore / AMPTransformer
Antimicrobial Peptide Predictor Using Finetuned Protein Transformers
antimicrobial-peptides machine-learning
Language:Python 3
Grupo-Medicina-Molecular-y-Traslacional / StarPep
StarPep toolbox: a software for studying the antimicrobial chemical space with newtork science tools and similarity searching models
antimicrobial-peptides bioinformatics-tool cheminformatics drug-discovery graph-analytics java network-analysis
Language:Java 3
dosorio / undergraduateThesis
Analysis of potential membrane disruption and stability of antimicrobial cationic peptides by molecular dynamics simulations
structural-biology antimicrobial-peptides machine-learning antibiotics molecular-dynamics-simulation
Language:Shell 1
fantin-mesny / amapec
Antimicrobial activity prediction for fungal effector candidates
annotation antimicrobial antimicrobial-peptides effector fungi machine-learning pdb-files prediction proteins structures
Language:Python 1
MagnusBertelsen / gmx_wheel_plus
gmx_wheel+ is a tool for analysing and visualizing the orientation of helical antimicobial peptides based on molecular dynamics simulations
antimicrobial-peptides bilayer bioinformatics-analysis bioinformatics-scripts bioinformatics-tool bioinformatics-visualization drug-design drug-discovery gromacs helix microbiology molecular-dynamics-simulation orientation-estimation peptides simulation
Language:Python 1
BigDataBiology / AMPSphereWebsite
Website for global antimicrobial peptides.
antimicrobial-peptides website
0
BioGenies / NegativeDatasets
Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data.
antimicrobial-peptides benchmarking machine-learning negative-sampling peptides r
Language:HTML 0
SysBioUAB / PyAMPA
PyAMPA: The new version of the AMPA software
ampa antibiotics antimicrobial antimicrobial-peptides peptide-prediction antimicrobial-prediction
Language:Python 0
Trailblazer29 / AMP-Activity-Prediction
Predict the activity of antimicrobial peptides
antimicrobial-peptides python
Language:Jupyter Notebook 0
AaronFeller / Cinful_v2
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
antimicrobial-peptides bacterial-genome-analysis bioinformatics-pipeline blast hidden-markov-model hmm hmmer hmmer3 search microcin
Language:Jupyter Notebook
auyer / IFB_ampmDb_POC
Antimicrobial Peptide web Database built with Django. Decreasing research costs to new antibiotics.
peptides antimicrobial-peptides ifb database django antibiotics
Language:Python
mtenrero / AntimicrobialStudyWebApp
WebApp used in antimicrobials resistance study in veterinary medicine in the city of Madrid, ES.
antimicrobial-peptides study-project webapplication data-collection database docker docker-compose nodejs-modules final-degree-project veterinary medicine drugs
Language:HTML