bacterial-database

There are 1 repository under bacterial-database topic.

jordanlab / stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
python mlst bacterial-genomes bacterial-database bioinformatics fastq-files kmer applied-bioinformatics-lab
Language:Python 41
medvir / VirMet
Set of tools for viral metagenomics.
bioinformatics bioinformatics-pipeline genome miseq python viral-database viral-metagenomics ncbi database bacterial-database
Language:Python 13
TIBHannover / BacDiveR
Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
r microorganism bacterial-database bacteriology webservice-client microbiology biobank r-package rstats bacterial-samples rlang rlanguage bacterial diversity bacteria api-client bacdive
Language:R 11
Computer-vision-in-the-service-of-bacteriology
NotTheStallion / Computer-vision-in-the-service-of-bacteriology
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
bacteria bacterial bacterial-database bacterial-genome-analysis bacterial-genomes bash computer-vision learning opencv
Language:Jupyter Notebook 2
jcasadogp / bacterial_growth
This repository contains the script developed for my Master Thesis in gut bacterial growth curves.
bacterial-database growth-curves python sql
Language:Python 1
SimranBansal98 / UniqueRepeats_BacterialProteome
proteome bacteria bacterial-database
Language:Python 0
glickmac / GRAB
Retrieve and create a custom BLAST database by taxonomic search
blast grab-workflow genbank database genomics genome bacterial-database protein genes bacteria
Language:Python
henriksson-lab / btyper_website
An atlas of high-quality Bacillus cereus group genomes with standardized, manually curated metadata
bacillus bacteria bacterial-database bacterial-genome-analysis bacterial-genomes genomics pathogen-surveillance taxonomy whole-genome-sequencing
Language:JavaScript