AaronFeller

mtl_summer_school_2024

Cinful_v2

HMMER-based microcin search using full microcin sequences and double-glycine signal region.

DeProt

Code for DeProt. A protein language model with quantizied structure and disentangled attention

cinful

A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinery

RoseTTAFold-All-Atom

GPD

Graphormer Based Protein Sequence Design

LigandMPNN

docker-in-colab

Run Docker inside Google Colab

mamba

PymolFold

Protein folding in Pymol

wilkelab.github.io

esmLoRA

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

deepAMP

MOL290C-Final-Project

Final project on smoking status classification

microcins_enterobacterales

A repository for the analysis involved in "Evidence for widespread class II microcins in Enterobacterales genomes"

FineLitterfallAnalysis

FLF data processing and visualization

GenomeAnnotation

Various scripts for genome annotation

ML_Alzheimers

ML model to predict Memapsin-1 and Memapsin-2 IC50 for small molecules

ARDRONICS

ARDRA analysis for microbial library