brain-atlas

There are 2 repositories under brain-atlas topic.

• dfsp-spirit / freesurferformats

  GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.

  freesurferrfileformatsneuroimagingbrainmrisurfacemeshvoxelresearchmghcurvlabelparcellationdtibrain-atlasbrain-surfaces
  Language:R 23

• Parietal-INRIA / DiFuMo

  Dictionary of Functional Modes for brain imaging

  brain-imagingatlasesbrain-atlas
  Language:HTML 23

• BlueBrain / Atlas-Download-Tools

  Search, download, and prepare brain atlas data.

  brain-atlasdownloadsearch
  Language:Python 16

• YasPHP / BrainAR

  A neuroanatomy-based augmented reality experience powered by OpenCV. Features 3D visuals of the Atlas Brain Map slices with real-time ArUco marker detection.

  aruco-markersaugmented-realitybrain-atlascomputer-visionneuroanatomyopencv
  Language:Python 12

• tsbinns / mni_to_atlas

  A simple Python-based tool for finding brain atlas regions based on MNI coordinates.

  aalbrain-imagingbrain-regionsneurosciencepythonpython3aal3brain-atlasneuroimagingbrain-visualizationmni
  Language:Python 10

• BlueBrain / nexus-bbp-domains

  BBP domains specification (schemas, vocabularies)

  morphologyelectrophysiologyschemasvocabularybrain-atlasschema
  Language:Scala 9

• blixilla / LocareJSON

  LocareJSON is a collection of JSON schemas for defining geometrical shapes with coordinates in 3D brain atlas coordinate spaces.

  brain-atlascoordinate-reference-systemsdata-integration-frameworkneuroscience-methodsspatial-search
  Language:Python 4

• sheelabhadra / Brain-Atlas-Project

  Code repository for automatic retrieval and registration of rodent brain atlases

  image-registrationbrain-atlassegmentationfeature-detectionfeature-matchingharris-cornersspeeded-up-robust-featuresimage-retrieval
  Language:Jupyter Notebook 4

• manasikattel / misa

  Brain tissue segmentation using several algorithms: EM, Atlas-based methods, nnunet

  brain-atlasbrain-tissue-segmentationexpectation-maximizationimage-segmentationmedical-imagingnnunetsegmentationsemantic-segmentation
  Language:Python 3

• shiveshc / CRF_Cell_ID

  Automatic annotation of cell identities in dense cellular images.

  image-processingwhole-braincrf-modelbrain-atlasneuroscience
  Language:MATLAB 3

• cau-riken / abart

  a web-based 3D tool to register brain MRI volumes to the Marmoset Brain Atlas

  brain-atlasthree-jswebappnifti
  Language:TypeScript 1

• cau-riken / zaviewer

  a web-based 2D high-resolution brain image viewer

  neuroimagingbrain-imagingslice-viewerbrain-atlaswebapp
  Language:JavaScript 1

• MIRTK / BAtCh

  Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow

  brain-atlasatlas-constructionmirtk
  Language:Shell 1

• cau-riken / atlas-unity-viewer

  Brain/MINDS Marmoset Brain Atlas Viewer made using Unity engine

  brain-atlasunity3d
  Language:C# 0