the PAN lab's repositories
Supercomputing_Instructions
Useful information to use the supercomputers
medical-imaging-framework
Pipeline to process images with CNN using json as input
Endoscopic_OCT_Epidural
Code used for the paper "Epidural anesthesia needle guidance by forward-view endoscopic optical coherence tomography and deep learning""
Endoscopic_OCT_PCN_guidance
Scripts used for an upcoming paper
FOCT_kidney
Code for the paper: "Deep-learning-aided forward optical coherence tomography endoscope for percutaneous nephrostomy guidance"
GattacaNet
predictive genomics
Raxport.net
.net version of Raxport for scan extraction of raw file
smoking_cessation_intervention_messages
Scripts for paper "Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians’ Evaluation of Large Language Models for Smoking Cessation Interventions"
thepanlab.github.io
Lab homepage
ukb_scripts
Scripts to download, process and merge ukb SNPs data
MetagenomicsTree
Data processing tree for metagenomics
paper-redaction-guidelines
This repository will compile all tools that are useful to write a paper.
PDN_Autograder
The autograder for Projects 1 through 5 for the CS PDN course taught by Dr. Pan
prb_guidance_paper
The code for paper "Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning"
timecourseBiomarker
This is the code repository for the GLMM analysis of metabolomic biomarker discovery in the paper “Persistent Biofluid Small Molecule Alterations Induced by Trypanosoma Cruzi Infection Are Not Restored by Antiparasitic Treatment.”
WetlandSoil
Stoichiometric model and scripts used in wetland soil project