Pypelines Utilizing a Modular Inventory
Nipype-based neuroimaging pipelines with a modular arhitecture.
*** Under development ***
Installation (developer version):
pip install git+https://github.com/spisakt/PUMI.git@v0.1.1a
Currtent focus:
- resting-state fMRI analysis
- machine learning
https://github.com/spisakt/PUMI/wiki
Requires:
- nipype (>=1.0.1) (http://nipype.readthedocs.io/en/latest/)
3rd party neuroimaging software
- FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/)
- AFNI (https://afni.nimh.nih.gov)
- ANTS (http://stnava.github.io/ANTs/)
- nilearn (http://nilearn.github.io)
Recommends:
- porcupine (>=1.4.0) (https://timvanmourik.github.io/Porcupine/)