spisakt

pTFCE

Probabilistic Threshold-Free Cluster Enhancement of Neuroimages

RPN-signature

The Resting-state Pain susceptibility Network signature.

pTFCE_spm

pTFCE SPM Toolbox

BWAS_comment

Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""

PUMI

Pypelines Utilizing a Modular Inventory

ratpype

Extension interfaces and modular workflow system for using nipype for small-animal MR imaging

gradientplot

Plot fMRI activation patterns in gradient space

pTFCE_C

c++ implementation of the pTFCE method (https://spisakt.github.io/pTFCE/)

benchmark_rsfMRI_prediction

Minimal scripts available for predictions on multiple datasets

rl_lecture

Short Lecture on Reinforcement Learning: model-free vs. model-based

PlaceboImagingMetaAnalysis

Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolbox), R(for linear mixed models, only), MRIcroGL (PASCAL-based program for plotting/rendering images). Start at A_Run_All_Analyses.m.

badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bids-website

Website for the Brain Imaging Data Structure standard.

C-PAC

Configurable Pipeline for the Analysis of Connectomes

cluster-utils

Collection of utilities / helper scripts to make life easier on our HPC clusters.

CV_moderncv

My latex CV with the 'moderncv' package

CV_twentysecondcv

My latex CV with the twentysecondcv package

Dataset-Bias

Detect and correct bias in neuroimaging

docker-shields

Shields.io in a Docker image :whale:

example

This an example app that can serve as a template.

FakeSite

MkDocs-based collection of jazz standard notations

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

magpie

Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, and more.

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

Neuroimaging_Pattern_Masks

Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.

seaborn

Statistical data visualization in Python

test

TestGitBingellab