Brain Research in Advanced Imaging and Neuromodeling - Toronto's repositories
GIRFReco.jl
An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia
girfISMRM2022
Demonstration code for the GIRF abstract for ISMRM 2022
MRIGradients.jl
Julia version of MRI gradient descriptions and GIRF applications.
bto_mri_protocols_info
This is a repository of wiki, code and containers for post-processing data acquired using the BRAIN-TO imaging protocols on a Siemens Prisma 3 T
cubric-physio
Physiological Noise Correction using the PhysIO Toolbox - Examples for CUBRIC, Cardiff
MP2RAGE-utils
User-friendly MP2RAGE scripts with a single YAML input.
book-chapter-uhf-neuro-mri
Educational Code related to book chapter 24 of "Ultra High Field Neuro MRI" - BOLD fMRI: Physiology and Acquisition strategies
presurfer
Scripts to prepare MP2RAGE for Freesurfer
rrsg_challenge_01
Consolidation of code from the RRSG challenge to reproduce Pruessmann's Non-Cartesian SENSE paper
xnat_utilities
Code base for XNAT applications
FaceOff
ANTs-based commandline utilities for (1) consistent, super-fast defacing of anatomical MRI images (2) dielectric pad masking
h4h_cluster_info
Updated documentation about accessing the h4h cluster - Authored by Mia Mojica and Ariana Besik
misc_scripts
Repository for scripts that are too small for their own repo, but useful enough for sharing.
MRIReco.jl
Julia Package for MRI Reconstruction
VAE-GAN-CelebA
Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019