flow-cytometry
There are 4 repositories under flow-cytometry topic.
whitews / FlowKit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Language:Python 155ImmuneDynamics / Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
Language:HTML 56lmweber / cytometry-clustering-comparison
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Language:R 44- Language:R 42
- Language:Python 39
- Language:Python 38
LCSB-BioCore / GigaSOM.jl
Huge-scale, high-performance flow cytometry clustering in Julia
Language:Julia 31burkesquires / immunology-informatics
Immunology Informatics - Big Data Analysis in Immunology - Tutorials
Language:R 21MorganConrad / fcs
Javascript / node.js code to read FCS flow cytometry data
Language:JavaScript 17tlnagy / FCSFiles.jl
🧫 Read Flow Cytometry Standard (FCS) files in Julia
Language:Julia 17FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Language:Python 14schienstockd / cecelia
Framework for image and flow cytometry analysis
Language:Jupyter Notebook 12- Language:R 11
- Language:R 10
buettnerlab / pytometry_legacy
This repository extends scanpy to handle flow and mass cytometry data.
Language:Jupyter Notebook 9ParkerICI / grappolo
R package to cluster single-cell data and generate features that can be used for model building
Language:R 9rprops / Phenoflow_package
R package offering functionality for the advanced analysis of microbial flow cytometry data
Language:R 9seaflow-uw / popcycle
Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
Language:R 9- flopr
ucl-cssb / flopr
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
Language:R 9 laderast / flowDashboard
Shiny Modules for visualizing flow cytometry data
Language:R 8NUPulmonary / 2020_Grant
Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper
Language:Jupyter Notebook 8maxsonBraunLab / CITEViz
CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq
Language:R 6- Language:Jupyter Notebook 6
CMET-UGent / Phenoflow_package
R package offering functionality for the advanced analysis of microbial flow cytometry data
Language:HTML 5plantarum / flowPloidy
An R package for flow cytometry histogram analysis
Language:R 5Python package with library and CLI tool for analyzing SeaFlow data
Language:Python 5cellengine / fcs-validator
In-browser utility for validating FCS file specification compliance
Language:JavaScript 4- Language:R 4
gitdemont / IFCshiny
An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry
Language:R 4- Language:JavaScript 4
- Language:R 3
- Language:C++ 3
- Language:R 3
martindisch / fcs
Low-level Flow Cytometry Standard (FCS) file serializer/deserializer
Language:Rust 3Conversion from light scattering measured by SeaFlow to cell diameter
Language:R 3- Language:Swift 3
