Philipp Münch's repositories
omm-antibiotics2022
Code to reproduce Münch et al. 2022 Manuscript "Pulsed antibiotic treatments of gnotobiotic mice manifests in complex community dynamics and resistance effects"
bowtie2_classification
A command-line tool for performing efficient genome sequence alignment. It includes scripts to build bowtie2 index from multiple fasta files and to perform sequence alignment in a sliding window manner, reporting the number and percentage of successful alignments to specified databases.
clean-theme-obsidian
Minimal theme for Obsidian
create-react-app-auth-amplify
Implements a basic authentication flow for signing up/signing in users as well as protected client side routing using AWS Amplify.
crispr2020
https://huttenhower.sph.harvard.edu/crispr2020/ datasets downloads
docker-stacks
Ready-to-run Docker images containing Jupyter applications
mkdocs-demo
MkDocs Demo
mkdocs-material
A Material Design theme for MkDocs
Obsidian-Monokai
Monokai theme for Obsidian
OligoMM-facilities
code to reproduce figure 7
roam-css-styles
Visually polished CSS styles for RoamResearch
roam_darktheme
A dark theme for Roam Research
tensorflow-statereader
This repository provides scripts to train an LSTM and then extract states from it in Tensorflow.