immunogenomics

There are 1 repository under immunogenomics topic.

• neofox

  TRON-Bioinformatics / neofox

  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors

  bioinformaticscancer-immunologyimmunogenicity-predictionimmunogenomicsneoantigen-annotationneoantigensnetmhciipannetmhcpan
  Language:Python 27

• immunogenomics / amp_phase1_ra

  :ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

  autoimmuneimmunogenomicsjupyter-notebookrsingle-cell-genomicssingle-cell-proteomics
  Language:Jupyter Notebook 20
• IgGeneUsage

  snaketron / IgGeneUsage

  Comparison of gene usage in immune repertoires under different biological conditions

  immune-repertoiresdifferential-gene-expressionhigh-throughput-sequencingimmunoinformaticsimmunological-bioinformaticsvdj-recombinationdifferential-analysistcr-repertoirebcr-repertoireb-cell-receptorimmunologyimmunoglobulinimmunogenomicsimmune-repertoireimmune-repertoire-analysis
  Language:R 6

• aislyn / TCR_circos

  R function to generate a circos-style ggplot from single-cell TCR data.

  tcrsinglecellcircosggplot2plotimmunogenomics
  Language:R 4

• rbowenj / disTIL

  The disTIL immunoprofiling toolkit

  bioinformaticscwlimmuno-oncologyimmunogenomics
  Language:Common Workflow Language 1

• fanzhanglab / amp_phase1_ra

  Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.

  autoimmune-diseaseimmunogenomicsomics-data-integrationsingle-cellr
  Language:Jupyter Notebook 0

• fanzhanglab / TteK

  Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.

  immunogenomicsinflammationrheumatoid-arthritissingle-cell-omicstcelltcr-repertoire
  Language:Jupyter Notebook 0