smith-waterman-algorithm

There are 0 repository under smith-waterman-algorithm topic.

• poke1024 / pyalign

  Fast and Versatile Alignments for Python

  bioinformaticsgotoh-algorithmneedleman-wunsch-algorithmsmith-waterman-algorithmdigital-humanitiesalignment
  Language:C++ 50
• smith-waterman-algorithm

  giorgapost / smith-waterman-algorithm

  A C++ implementation of the Smith - Waterman algorithm. The system consists of 3 different implementations: the one is sequential, while the other two parallelize the execution in a coarse and a fine level respectively, with the use of multithreading.

  alignment-algorithmscoarse-grainingcpluspluscppfine-grainedmultithreadingompparallel-programmingsmith-watermansmith-waterman-algorithmomp-parallelsequence-alignmentparallel
  Language:C++ 7

• poke1024 / simileco

  A header-only templated C++17-library for fast and versatile sequence alignment computations.

  needleman-wunsch-algorithmsequence-alignmentsmith-waterman-algorithmsmith-waterman-alignment
  Language:C++ 3

• shivChitinous / seq-al

  aligning DNA and protein sequences using dynamic programming

  affine-gap-penaltieslinear-gap-penaltiessmith-waterman-algorithmprotein-sequencessequence-alignmentneedleman-wunsch-algorithm
  Language:Jupyter Notebook 3

• CharliesCodes / bioinformatics

  A compilation of all the programs in my bioinformatics course

  bioinformaticssequence-alignmentlocal-alignmentglobal-alignmentsmith-waterman-algorithmneedleman-wunsch-algorithmsemiglobalmatchingsemiglobalfree-shift-alignmentde-novo-assemblymapping-assemblypattern-matchingudemyudemy-course
  Language:Python 2

• Howeng98 / Smith_Waterman_parallel

  Implement parallel Smith Waterman algorithm on CUDA

  cudacuda-programmingneedleman-wunschneedleman-wunsch-algorithmparallel-programmingsmith-watermansmith-waterman-algorithmsmith-waterman-alignment
  Language:Cuda 2

• mutalibcs / Bio-informatics

  Bio informatics course materials for NEUB students.

  edit-distance-algorithmneedleman-wunsch-algorithmneubsmith-waterman-algorithmdna-transcriptionpdppartial-digest-problembio-informaticsbioinformaticsbioinformatics-algorithmsalgorithmedit-distanceedit-distance-algorithm-implementationedit-distance-algorithmsneedleman-wunschneedleman-wunsch-alignmentneedleman-algorithm
  Language:C++ 2

• Seb943 / Smith_Waterman_Py

  Implementing the Smith-Waterman algorithm in Python

  bioinformaticsbioinformatics-scriptsbioinformatics-tooldynamic-programmingpythonsmith-watermansmith-waterman-algorithm
  Language:Python 2

• Noorts / DLSA

  🧬 Distributing Local Sequence Alignment using Volunteer Computing

  bioinformaticsdistributed-systemssequence-alignmentsmith-waterman-algorithmcrowdsourcing
  Language:Python 1

• anita-brzoza / university_projects

  The repository contain directories of projects done during the bioinformatics degree program

  fastqcbowtie2data-analysisgatkmultiqcsamtoolstrimmomaticvcftoolsbioinformaticsbioinformatics-pipelinesmith-waterman-algorithm
  Language:HTML 0

• AntonioFuziy / DNA_mutation_detector

  A C++ project to detect mutations on DNA sequence, comparing two DNA samples. This project was built based on a Supercomputing subject and some classic algorithms are used in this project, such as Smith Waterman, Random Local Search and Exaustive Search

  cppcudadna-sequencesexaustive-searchgpugpu-programmingheuristic-search-algorithmsjupyter-notebooknvidianvidia-cudanvidia-gpuomp-parallelparallel-computingpythonsmith-waterman-algorithmsupercomputersupercomputing
  Language:Jupyter Notebook 0

• Blinsk / AlignmentOfObjectArrays

  NodeJs implementation of Smith-Waterman- and Needleman-Wunsch-Algorithm for Arrays of Objects

  needleman-wunsch-algorithmnodejssmith-waterman-algorithm
  Language:JavaScript 0

• Brandonag1997 / Local-Alignment

  A Go implementation of the Smith–Waterman algorithm

  smith-waterman-algorithm
  Language:Go 0

• didar00 / Global-and-Local-Alignment-Algorithms

  Implementations of Needleman-Wunsch (global alignment) and Smith-Waterman (local alignment) algorithms using Python.

  bioinformaticsneedleman-wunsch-algorithmpythonsequence-alignmentsmith-waterman-algorithm
  Language:Python 0

• grace-raper / smith-waterman

  The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment

  computational-biologydna-sequence-analysisdynamic-programmingjavasmith-waterman-algorithm
  Language:Java 0

• jeremyButtler / alnSeq

  AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.

  alignalignmenthirschbergneedleman-wunschsequence-alignmentsmith-watermansmith-waterman-algorithmsmith-waterman-alignmentwaterman
  Language:C 0

• Junior-Weil / Longest-Common-Subsequence

  Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm

  backtrackingbacktracking-algorithmdynamic-programmingsubsequence-matchingneedleman-wunschneedleman-wunsch-algorithmsmith-watermansmith-waterman-algorithm
  Language:Python 0

• Kostisef / smith-waterman-parallel

  A parallel implementation of Smith-Waterman algorithm for determining similar regions between two strings of nucleic acid sequences or protein sequences.

  cppopenmp-parallelizationsmith-waterman-algorithm
  Language:C++ 0

• olledejong / Sequence-Alignment

  MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

  needleman-wunschneedleman-wunsch-algorithmsequence-alignmentsmith-watermansmith-waterman-algorithmsmith-waterman-alignmentneedleman-wunsch-alignmentglobal-alignmentlocal-alignment
  Language:C++ 0

• quyixiang / Map_miRNA_targets

  pythonsmith-waterman-algorithmsequence-alignment
  Language:Python 0

• sonechkina / SmithWaterman

  R package for global alignment between two genomic sequences

  rbioinformaticsgenomicsr-packagesmith-waterman-algorithmsmith-waterman-alignmentdevtoolsglobal-alignment
  Language:R 0

• tsoomo446 / bioinformatic

  Next.js project implementing bioinformatics algorithms, including Needleman-Wunsch and Smith-Waterman, for sequence alignment with a modern web interface. ICSI310 ,Introduction to Bioinformatics

  bioinformaticsneedleman-wunsch-algorithmnextjssmith-waterman-algorithmuniversity-course-project
  Language:TypeScript 0

• fadyehabamer / BioInformatics-SandBox

  Bio Informatics Lecture Notes @ Faculty of computer and information Sciences ' MU ' for the '4th Year' IT Department

  needleman-wunsch-algorithmpairwise-alignmentsmith-waterman-algorithmmultiple-sequence-alignmentsumofpairsstar-algorithm