everestial

Kiran N' Bishwa's repositories

VCF-Simplify

A python parser to simplify and build the VCF (Variant Call Format).

Language:PythonMIT45 3 9

phase-extender

A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

Language:Jupyter Notebook13 30

phase-stitcher

a python program to stitch the ReadBack phased haplotypes in F1 hybrids.

Language:Jupyter Notebook6 1 1

phaseRB

A tool for running readbackphasing on VCF using BAM (reference genome aligned genome or RNAseq reads).

Language:Python4 20

ASE-CADG

Pipeline for ASE (allele specific expression) using competitive alignment to diploid genome

Language:HTML3 10

vcfparser

Python parser for parsing the genomics and transcriptomics VCF data.

Language:PythonMIT3 2 1

PhaseIT

A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.

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SmallTools

Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.

Language:PythonGPL-3.02 10

TestSwitchErrors

This is a tutorial that shows how phaseExtender can be used for recursive improvement of haplotype phasing and how to test the phasing quality by measuring switcherrors.

Language:Jupyter Notebook2 1 1

Auxin-Transport

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CheckImageScanning

Application to scan the check image and extract data.

Language:Jupyter Notebook1 10

classifier-reborn

A general classifier module to allow Bayesian and other types of classifications. A fork of cardmagic/classifier.

Language:RubyLGPL-2.1100

cyvcf2

cython + htslib == fast VCF and BCF processing

Language:CMIT1 10

everestial.github.io

1 10

g2gtools

Custom genome creation and coordinate conversion

Language:PythonGPL-3.01 10

github-slideshow

A robot powered training repository :robot:

Language:HTMLMIT1 1 2

MathCollections

Collection of several math problems and their coding solutions

Language:Python1 10

merge-conflicts

Language:HTMLMIT1 10

phase-Imputer

Phase imputation in RBphased haplotypes using first order markov chains.

GPL-3.01 10

phase_extender_dev

Language:Python1 20

phaser

phasing and Allele Specific Expression from RNA-seq

Language:PythonGPL-3.01 20

PlotAwesome

This repo contains collections of plots and codes used to generate it.

Language:HTML1 10

ProjectPortfolio_Public

100

resume.github.com

Resumes generated using the GitHub informations

Language:JavaScript100

ScientificWorkshopIOF

To host the content related to Scientific Workshop efforts

1 10

StockMarketAPI

1 10

TestOfApicalDominanceInArabidopsisLyrata

Analyses of the data from auxin inhibition assays. Includes analyses of trait measurements by treatments for several time periods (months).

Language:HTML1 10

Typora-Onigiri

Typora Theme for Japanese Texts

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VCDB

VERIS Community Database

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ComputerVision01

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