eisascience

ScientificOSX

Setting up a new mac OSX

eisascience.github.io

Eisa Mahyari's GitHub Page

HISTA

Human Infertility Single-cell Testis Atlas

17-testis-single-cell-R-github-data

17 testis single cell R analysis processing

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

scCustFx

Custom FX used in single-cell analysis and exploration.

ShinySDA

Shiny tool to load and browse SDA objects

CellularPhenotypes

A comprehensive collection of transcriptomic (and other) markers for identification of individual cells (phenotype, state, etc) at various scopes

docker-data-science

Set up an automated data science environment using Docker

Docker_DataScience

Rocker/verse based docker image + Goodies

Dockerfiles

MCDS

MCDS = Multimodal Classsification Dataset Simulator

monet

Monet: An open-source Python package for analyzing and integrating scRNA-Seq data using PCA-based latent spaces

MoSpaTA

Mouse Spatial omics Testis Atlas

NormalizationMethods

An accumulation of normalization methods

PViST

Platform for exploration, analysis, & Visualization of Spatial Transcriptomes (PViST). A shiny app package.

PythonProj

RheSpaTA

Rhesus Spatialomic Testis Atlas

rnaseq

RTLbase

The R Transfer Learning (RTL) Classification Framework - Baseline Implementation v1.0.0

SapSpaTA

scRNASeq_old

Tools and functions for conducting scRNASeq in my pipelines

scRNASeqEisa

Shapiro_Haigwood_SHIV

shiny

shiny-examples

ShinyMultiSDA

ShinyMultiSDA (Shi-mu-sda) is a multi SDA integration Shiny tool

Stereopy

A toolkit of spatial transcriptomic analysis.

Wong-Gold-Lewinsohn

TCR Enrichment Analysis (TEA) Webtool

XchromCN_Docker

A Docker pipeline to call X chromosome copy number on BAM files