There are 5 repositories under immunotherapy topic.
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution
Analysis of single-cell RNA-seq data from patients with immunotherapy-related colitis.
A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen
A poster showing TIGS project at BioForum2019, ShanghaiTech University
neoantigen depletion checking and detection
A Community Curated Immune Resource Database in R format
An example of immunopipe
Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods
Pharmacokinetic Modeling and Optimization of Omburtamab (8H9) Delivered Through the CSF
Executable of trained model presented in Boll&Vázquez Montes de Oca et al. (unpublished).
Files and code used to generate the CARTAR app to identify and validate CAR targets for cancer treatment.
Discrete Event Simulation | Queue Modeling | Bayesian Optimization | Full Factorial Design. "Design and Operation of Individualized Single-use Systems: Car-T Cell Therapy". Modeling Single-use systems using stochastic optimization techniques.
Code and data to support doi:10.1136/jitc-2020-001506
Calculate and explore property indices of peptides for cancer immunotherapy study
T-cell receptor specificity prediction using Deep Learning
Analysis of single-cell RNA-seq data from patients with immunotherapy-related myocarditis.
Graph analytics for immunotherapeutic response prediction for metastatic melanoma patients
Modeling Tumor Escape Mechanisms for DC-Based Immunotherapy
Classification task on Immunotherapy data set
Wart Immunotherapy Prediction is a medical decision support system that helps doctors to decide whether Immunotherapy is the right treatment method for their patients.
Analysis associated with the publication, "Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers" DOI : 10.1007/s00432-019-02982-4
This project aims to model the disruptive effects of cytotoxic chemotherapeutic drugs on the immunoediting process.
Files and code used to generate the CARTAR app to identify and validate CAR targets for cancer treatment.
Multimodal immunogenomic biomarker analysis of tumours from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab
analysis related to the FITNESS Study at OSU