epitopes

There are 0 repository under epitopes topic.

• cbalbin-bio / Epitopedia

  Epitopedia: identifying molecular mimicry of known immune epitopes

  bioinformaticscomputational-biologystructural-biologymolecular-mimicryepitopesiedbpdbdrug-repurposing
  Language:JavaScript 6

• Magnushhoie / discotope3_web

  DiscoTope-3.0: Improved B-cell epitope prediction using AlphaFold2 modeling and inverse folding latent representations

  b-cell-receptorepitopesepitopes-prediction
  Language:Python 4

• mnielLab / NetTCR-2.2

  Sequence-based prediction of peptide-TCR interactions using paired chain data

  bioinformaticsepitopesimmunoinformaticsimmunologymachine-learningt-cell-receptor
  Language:Python 4

• nec-research / tc-hard

  Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022

  bioinformaticsdeep-learningepitopesimmunologytcr
  Language:Jupyter Notebook 4

• ramonamerong / hladownload

  A tool for downloading HLA alleles, epitopes and frequencies

  hlaepitopeepitopesdnafrequencyallele-frequenciesalignmentmultiple-sequence-alignmentmhcallelesdownloadparserpythonpython-modulecommand-line
  Language:Python 4

• MICS-Lab / pelc

  Python Eplet Load Calculator

  epitopesepletshlapython
  Language:Python 3
• aprank

  trypanosomatics / aprank

  This is APRANK, an Antigenic Protein and Peptide Ranker.

  antigenicityantigensepitopespathogens
  Language:R 3

• Alepidoptera7 / ssDNA-Aptamer-Prediction-

  BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

  aptamersepitopesepitopes-predictionbioinformaticsmachine-learningnucleotide-alignment
  Language:Python 1

• MiriamMarinS / ProtEp

  Processing of proteomic files for prolamin peptides analysis and CD epitopes search for each protein fraction.

  bioinformaticsproteomicsepitopes
  Language:Python 1

• MiriamMarinS / wheatAHP

  Implementation of the Analytic Hierarchy Process (AHP) to obtain the immunogenicity score of wheat lines based on their celiac disease (CD) epitopes matches on alpha- and gamma-gliadins amplicons by NGS and the score for oligopeptides based on an IFN-g ELISpot assays with fresh peripherical blood mononuclear cells (PBMCs).

  bioinformaticsngsepitopesahpanalytical-hierarchy-processimmunogenicity-prediction
  Language:Python 1

• mrueda / Epitopes4Cancer

  SRTI - Results in HTML from an immuno-oncology project developed in collaboration with Scripps scientists

  bioinformaticscancerepitopesscrippssrti
  Language:HTML 0

• trypanosomatics / The-Chagas-Disease-Antigen-and-Epitope-Atlas

  The Trypanosoma cruzi Antigen and Epitope Atlas: deep characterization of individual antibody specificities in human Chagas Disease patients across the Americas

  antigenschagasdiagnosticsepitopesmicroarray-data-analysis
  Language:R 0

• damianosmel / VirusGenoUtil

  This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.

  bioinformaticsvirusalignmentsepitopesdatabase
  Language:Python

• usacfi / CovidSurveillance

  Genomic sequence analysis and visualizations to monitor emerging SARS-CoV-2 variants and their potential impact to vaccine efficacy

  epitopessurveillancecovid-data
  Language:Shell