tanghaibao

goatools

Python library to handle Gene Ontology (GO) terms

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

treecut

Find nodes in hierarchical clustering that are statistically significant

mcscan

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

trimReads

Utility programs to trim or sort Illumina reads with adapter sequences

rust-wfa2

Rust binding for WFA2-lib

dna-pygments

Javascript code to highlight features in biological sequences

jcvi-bin

Collection of third-party softwares used in jcvi library

positional-history

Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroups

Splithunter

Identify split reads in given chromosomal regions

dotfiles

bashrc, vimrc, gitconfig and various other configuration files

pgdd

Dynamic contents within the plant genome duplication database

pybind11_log

A bridge from C++ to Python logging

nannou-playground

Animation projects that leverage the excellent nannou library

tanghaibao