Beast code in Giters

jeremyButtler's repositories

A pipeline to detect co-infections from Nanopore reads.

Language:CCC0-1.02 10

Converts a nbib file to a bibtex file

Language:CCC0-1.0100

AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.

Language:CMIT010

A collection of bash scripts to allow a reference based annotation of ASFV genomes

Language:CMIT000

My goal is to see how the choice of a reference genome affects the artic pipelines accuracy.

Language:CMIT010

Scripts I used to run assemblers for the 2021 benchmarking study

Language:Shell010

a series small, niche biiology tools. These are not overall very usefull, except to me.

Language:CUnlicense000

Find complete diRNA and vRNA influenza reads ids in long reads. Use something like fqGetIds or seqkit to extract reads by read ids.

Language:CUnlicense010

A program using SMID vectors to extract fastq reads by read ids.

Language:CMIT010

Checks to see if a flu HA sequence belongs to a high path or low path flu strain.

Language:CUnlicense010

This is a wrapper to run PrestonLeung's Nano-Q with

Language:PythonUnlicense000

Pandoc-ditaa is a pandoc lua filter that used ditaa to convert ascii digrams in markdown files into images.

Language:LuaCC0-1.0010

My attempt to convert the WHO's second addition TB catalog to a flat file

Language:CUnlicense030