snakemake-pipelines

There are 0 repository under snakemake-pipelines topic.

giesselmann / nanopype
Snakemake pipelines for nanopore sequencing data archiving and processing
nanopore workflow snakemake-pipelines docker pipeline singularity
Language:Python 88
Snakemake-Profiles / lsf
Snakemake profile for running jobs on an LSF cluster
snakemake bioinformatics bioinformatics-pipeline snakemake-pipelines lsf profile snakemake-profile cluster cluster-profile
Language:Python 36
dohlee / snakemake-bismark-methyldackel
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
reproducible-research reproducible-science pipeline snakemake snakemake-pipelines bioinformatics methylation
Language:Python 5
deepalivasoya / Snakemake-food
snakemake snakemake-pipelines snakemake-workflow food recipes
Language:Python 4
sdtemple / isweep
Statistical inference of recent positive selection using IBD segments
coalescent identity-by-descent selective-sweeps snakemake-pipelines
Language:Jupyter Notebook 3
datasnakes / orthoevol-snakemake
A snakemake workflow for the OrthoEvol python package.
orthoevol orthology-inference snakemake snakemake-pipelines snakemake-workflow
Language:Python 1
ChristopheVdE / Minion-Illumina-pipeline
wgs docker snakemake-pipelines bioinformatics-pipeline illumina minion-sequencer
Language:Python 0
gavinf97 / thesisreal
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
ngs bioinformatics pipeline genomics bash-script r-markdown nextflow-pipelines snakemake-pipelines bgc antismash microbiome assembly
Language:Jupyter Notebook 0
cnuahs / snakemake-minimal
A minimal Snakemake pipeline.
snakemake snakemake-pipeline snakemake-pipelines snakemake-workflow snakemake-workflows
Language:Python
gauravcodepro / snakemake-iterations
utility for writing the snakemake files with faster iterations.
computing-cluster high-performance-computing snakemake snakemake-pipeline snakemake-pipelines snakemake-workflow
Language:Shell
hermidalc / rna-seq-star-gex
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
bioinformatics-analysis bioinformatics-pipeline computational-biology snakemake-workflows snakemake-pipelines bioinformatics
Language:Python
leylabmpi / alphafold_sm
alphafold2 snakemake-pipelines
Language:Python
isoworm
mspodda / isoworm
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
bioinformatics isoform-quantification isoforms polya-tail snakemake-pipelines transcriptomics
Language:Python