nanopore-analysis-pipeline
There are 3 repositories under nanopore-analysis-pipeline topic.
biocorecrg / master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
Language:Nextflow 88- RawHash
CMU-SAFARI / RawHash
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
Language:C 40 BeatsonLab-MicrobialGenomics / micropipe
A pipeline for high-quality bacterial genome construction using ONT sequencing
Language:HTML 38gaolabtools / scNanoGPS
Single cell Nanopore sequencing data for Genotype and Phenotype
Language:Python 35- Language:Python 11
CarolinaPB / nanopore-assembly
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
Language:Python 8lsmo-epfl / zeopp-lsmo
zeo++ fork of the LSMO
Language:C++ 8HKU-BAL / ONT-TB-NF
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
Language:Nextflow 5- Language:Shell 4
shubhamchandak94 / lossy_compression_evaluation
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
Language:Jupyter Notebook 3- Language:Shell 2
leahkemp / ont_human_workflow
A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.
Language:Shell 2AndreHolzer / PuntSeq
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater
Language:HTML 1baynec2 / nanopore_pipelines
Nanopore sequencing experimental protocols and computational pipelines
Language:Shell 1Meadowlion / LM_ToolKit
This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.
Language:Python 1STTLab / HIV-64148
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Language:Python 1areebapatel / Rapid-CNS2
Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline
Language:Shell 0Kathirvel-Kandasamy / Haplotype-aware-variant-calling-from-long-read-sequence
Haplotype aware variant calling from long read sequence
Language:Shell 0marcDabad / snakemake_nanometh
snakemake pipeline based on nanopolish
Language:Python 0asadprodhan / Dorado-basecalled-reads-improve-old-bacterial-genome-assembly
Dorado-basecalled reads improve old bacterial genome assembly
chaoatic / amplimap-nf
A bioinformatic pipeline for aligning amplicon reads to a DNA database based on Nextflow
Language:Nextflow- Language:Nextflow
