cytof
There are 1 repository under cytof topic.
- sccomp
stemangiola / sccomp
Testing differences in cell type proportions from single-cell data.
Language:R 77 lmweber / cytometry-clustering-comparison
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Language:R 43- Language:R 41
LCSB-BioCore / GigaSOM.jl
Huge-scale, high-performance flow cytometry clustering in Julia
Language:Julia 29- Language:R 10
casanova-lab / iMUBAC
Integration of multi-batch cytometry datasets
Language:R 8TAPE-Lab / CyGNAL
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Language:Python 7kevin931 / CytofDR
A Python package for dimension reduction and evaluation workflows with CyTOF data.
Language:Python 5Accurate and Efficient Simulation of CyTOF data
Language:Python 5AlexanderKononov / cytofBrowser
Analysis and visualisation single-cell proteomic data (CyTOF)
Language:R 3- Language:R 3
JimboMahoney / cytofclean
Fast auto-cleanup of CyTOF data
Language:R 3- Language:R 3
R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank
Language:R 2yannabraham / bodenmiller
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
Language:R 2Lite version of the tool to analyze and visualize CyTOF data (still under development)
Language:R 1desmchoy / BinaryClust
CyTOF data exploration and analysis pipeline using binary classification followed by clustering
Language:R 1dweth / mcsnac
Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
Language:Fortran 1Created to help backup data from a CyTOF system
Language:Batchfile 1R script for summarising paramater / channel intensity from flow or mass cytometry data
Language:R 1Plots log histograms of FCS files like CyTOF's PlotViewer program
Language:R 1reeves-lab / 2020-Coxiella-Scientific-Reports
Analysis scripts for vaccination and challenge study published in Scientific Reports.
Language:R 1Scripts to perform automated pipetting of (1) Barcode Production & Aliquoting and (2) a Robotic Extraction Protocol of Organoids
Language:Python 1- Language:MATLAB 0
Opens two or more FCS files and creates new files that contain only the Channels common to all.
Language:R 0Shiny interface to create CyTOF .tem files
0Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.
Language:R 0- Language:Python 0
- Language:Python
- Language:R
Very fast method to read number of events from some / all FCS files in a directory
Language:RR Script to plot the average event rate in flow or mass cytometry (FCS) files
Language:RA handy spreadsheet for looking up elemental isotopes by symbol or mass.
- Language:R
- Language:Jupyter Notebook
YogiOnBioinformatics / B-Cells-In-Atherosclerosis
Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program
Language:Jupyter Notebook
