collagen

There are 0 repository under collagen topic.

ajinkya-kulkarni / PyHistology
Python package that uses colorspace-based segmentation to analyze histopathology images.
collagen digital-pathology histology-images segmentation image-processing image-segmentation python
Language:Python 12
rgerum / saenopy
Semi-affine Elastic Network Optimizer to calculate forces in collagen or other biopolymer networks.
finite-element-methods collagen modelling solver cell-mechanics
Language:Python 11
woolfson-group / isambard
Intelligent System for Analysis, Model Building And Rational Design.
python bioinformatics structural-biology api bristol analysis modelling coiled-coil collagen pypi protein-design computational-biology
Language:Python 8
christophmark / jointforces
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
particle-image-velocimetry finite-elements material-simulation traction-force-microscopy multicellular-aggregates biophysics spheroid collagen
Language:Python 7
CompactionAnalyzer
davidbhr / CompactionAnalyzer
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
bioinformatics biophysics cell cell-mechanics collagen compaction contractility fiber fibrosis image-processing imaging microscopy orientation structure tissue-analysis
Language:Python 7
ShapeX-Collage
DanStromi / ShapeX-Collage
Shape Collage generator for Windows !
collage collage-maker collagen shape shapes
4
woolfson-group / ccbuilder2
A web application for atomistic modelling of coiled coils and collagens.
coiled-coil collagen web-app docker isambard woolfson-group elm javascript flask mongodb science scientific-computing protein-structure protein
Language:Elm 3
hodgesr2 / Pan-Collagan-Ovarian-Cancer-Study-from-TCGA
MSDS Thesis - Pan-Collagen Survival Analysis of CNV in Ovarian Cancer
collagen cnv cancer ovarian-cancer copy-number-variation survival-analysis pan-collagen
Language:HTML 2
TCox-Lab / PicRed_Biref
ImageJ / FIJI script to analyse picrosirius red stained sections imaged under polarising light
collagen imagej imagej-macros picrosirius-red
2
NataliaKudr / SpeciesIdentification
Species identification based on mass spectrometry biomarker clustering
species species-identification species-identity collagen collagen-peptidemass-fingerprinting python3 binary-data clustering-algorithm clustering-evaluation k-means-implementation-in-python k-modes hierarchical-clustering biomarkers mass-spectrometry
Language:Jupyter Notebook 1
TCox-Lab / Collagen_Orientation
ImageJ / FIJI script to assess the orientation of collagen fibres in SHG images
imagej imagej-plugins orientation collagen shg
1
FordeLab / AutoSmarTrace
Matlab based program for automatic chain tracing for AFM images of single molecule collagen, DNA, and other polymers.
automation image-processing image-segmentation tracing-applications collagen dna afm afm-image-segmentation persistence-length filament-detection filament-tracking
Language:MATLAB 0
FordeLab / SmarTrace
chain tracing program developed to analyze AFM images of single molecules
afm image-processing dna collagen tracing-applications persistence-length afm-image-segmentation filament-tracking
Language:MATLAB 0
hits-mbm-dev / colbuilder
Building collagen fibrils from amino acids sequences
collagen modeling
Language:Python
PiotrTymoszuk / collagen_pca
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
collagen differential-gene-expression gene-set-enrichment-analysis metabolic-models prostate-cancer semi-supervised-clustering signaling-pathways survival-analysis gene-ontology-terms gradient-boosted-machines
Language:R