寒江雪's repositories
FluorescenceLifetime
A MATLAB data analysis toolkit for Fluorescence Lifetime Imaging Microscopy (FLIM) and an Alba v5 time-resolved confocal microscope operations manual
CELESTAPowerLog
A PowerShell script that logs the real-time power of a laser line on a CELESTA Light Engine® (and a data visualization/analysis script that estimates the exposure time)
CyanobacteriaBloom
2-D modeling of cyanobacteria blooms over time [UMich BIOINF 563 W19 (lectured by Prof. Victoria Booth) final project]
HierarchicalRecruitmentChain
UMich PHYSICS 630 W16 (lectured by Prof. David Lubensky) final project
IXNAnalysis
The code base of the IXNAnalysis toolkit developed by the Joglekar Lab (main contributors: Chu Chen, Ajit Joglekar, and Rebekah Ronan)
LC-MS-MS
This depository stores operation guidance for LC-MS/MS using the Thermo Scientific Vanquish UHPLC -- TSQ Altis systems and a custom data analysis toolkit.
MinIJPlugin
An ImageJ plugin (with a GUI) that allows users to select a square ROI with specified coordinates
nd-stack-splitter
A macOS Shell script to split a MetaMorph® .nd stack into subgroups of positions and to put together related images into subfolders
readHeader
Read formatted (binary) file header
RNASeqVisualization
For visualizing RNA-Seq data (analyzed by the DESeq2 pipeline)