Xinglab

Xinglab's repositories

rmats-turbo

Language:C++NOASSERTION244 16 406

rmats2sashimiplot

Language:PythonGPL-2.0142 10 114

DARTS

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

Language:PythonNOASSERTION111 12 21

espresso

Language:PythonNOASSERTION60 10 67

lr2rmats

Long read to rMATS

Language:CGPL-3.031 6 13

CLAM

CLIP-seq Analysis of Multi-mapped reads

Language:PythonGPL-3.029 11 19

rMATS-long

Language:PythonNOASSERTION28 5 12

IRIS

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

Language:PythonNOASSERTION24 7 17

TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Language:CMIT20 6 21

PEGASAS

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

Language:Python19 3 6

rMATS-DVR

Language:PythonGPL-3.018 8 3

abPOA

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Language:CMIT13 8 1

GTEx-brain-sQTL

Language:R12 70

Myc-regulated_AS_PrCa_paper

Scripts for plotting figures and running analysis throughout the manuscript

Language:R11 30

PAIRADISE

Paired Replicate Analysis of Allelic Differential Splicing Events

Language:Python11 7 9

isoCirc

Language:PythonGPL-3.010 5 15

TEQUILA-seq

The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

Language:PythonNOASSERTION8 6 1

GLiMMPS

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SURVIV

Survival Analysis of mRNA Isoform Variation

Language:PythonNOASSERTION6 6 1

siri

Language:Python5 8 1

ASPRIN

Language:PythonGPL-3.03 5 1

intron-retention-paper

Language:Jupyter NotebookMIT3 80

rmats-turbo-tutorial

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ProteoSeq

ProteoSeq: A proteogenomics workflow leveraging long-read RNA-seq data for discovery of isoform-level peptides and proteins.

Language:PythonNOASSERTION2 30

SQUID

Stringent Quantitation of Unspliced Intron by Deep-sequencing

Language:PythonGPL-3.02 6 1

iDARTS

Predicting splicing effects of human genome variants from sequences

Language:PythonNOASSERTION1 80

Xinglab.github.io

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scCirRL-seq

Haplotype-resolved full-length transcriptome analysis in single cells by scCirRL-seq

Language:PythonMIT000

sparks

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SPIRIT

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