Xinglab

Xinglab's repositories

rmats-turbo

Language:C++NOASSERTION200 16 332

rmats2sashimiplot

Language:PythonGPL-2.0122 10 103

DARTS

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

Language:PythonNOASSERTION107 12 19

espresso

Language:PythonNOASSERTION45 10 41

CLAM

CLIP-seq Analysis of Multi-mapped reads

Language:PythonGPL-3.026 11 18

lr2rmats

Long read to rMATS

Language:CGPL-3.026 7 12

IRIS

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

Language:PythonNOASSERTION20 7 13

PEGASAS

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

Language:Python18 4 6

rMATS-DVR

Language:PythonGPL-3.018 8 3

TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Language:CMIT17 6 19

rMATS-long

Language:PythonNOASSERTION16 5 2

abPOA

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Language:CMIT12 8 1

GTEx-brain-sQTL

Language:R12 70

SEASTAR

SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA

Language:PythonGPL-3.012 7 3

Myc-regulated_AS_PrCa_paper

Scripts for plotting figures and running analysis throughout the manuscript

Language:R11 30

PAIRADISE

Paired Replicate Analysis of Allelic Differential Splicing Events

Language:Python11 7 9

isoCirc

Language:PythonGPL-3.09 5 11

TEQUILA-seq

The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

Language:PythonNOASSERTION8 6 1

GLiMMPS

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SURVIV

Survival Analysis of mRNA Isoform Variation

Language:PythonNOASSERTION6 6 1

siri

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ASPRIN

Language:PythonGPL-3.03 5 1

intron-retention-paper

Language:Jupyter NotebookMIT3 80

proteoseq

Proteotranscriptome pipeline

Language:Objective-JGPL-3.02 6 2

SQUID

Stringent Quantitation of Unspliced Intron by Deep-sequencing

Language:PythonGPL-3.02 6 1

iDARTS

Predicting splicing effects of human genome variants from sequences

Language:PythonNOASSERTION1 80

Xinglab.github.io

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rmats-turbo-tutorial

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sparks

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SPIRIT

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