jdrudolph

goenrich

GO enrichment with python -- pandas meets networkx

photon

PHOsphoproteomic dissecTiOn using Networks

uniprot

command-line and python interface to the uniprot database

fnf.theflash-python-pilot

csv

Python script for command-line csv handling

fnf.python-starterkit

use python for the fast'n'furious challenge

Lanelet2

Map handling framework for automated driving

webgestalt

Automated GO enrichment analysis using Webgestalt

eyerecorder

big-button macro recording and bookmarks

CD4ML-Scenarios

Repository with sample code and instructions for "Continuous Intelligence" and "Continuous Delivery for Machine Learning: CD4ML" workshops

compbio-base

A C# solution with projects containing utiliy classes that are used e.g. in MaxQuant and Perseus

cytoscape-app-samples

Cytoscape 3 sample code for App developers.

devtools

Tools to make an R developer's life easier

eyewriter-chrome-ext

fastcluster

:exclamation: This is a read-only mirror of the CRAN R package repository. fastcluster — Fast Hierarchical Clustering Routines for R and Python. Homepage: http://danifold.net/fastcluster.html

landscraper

lwc

last weeks commits -- markdown summary of commits from last week

mindmaps-2-tex-converter

ms-numpress

Implementations of compression schemes for numeric data from mass spectrometers.

mypy

A collection of python tools

networkx

Official NetworkX source code repository.

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

perseus-plugins

The perseus software for the statistical analysis of omics data (http://www.perseus-framework.org/) has a plugin architecture. Here you find the code necessary to develop your own plugins.

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

teamcity_agent_mono

TeamCity agent with mono installed

uniprot_mapper

simple python script that provides a command-line interface to uniprot.org/mapping