regulatory-networks

There are 0 repository under regulatory-networks topic.

AMSSwanglab / SpecVar
SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks
gwas phenotopic-correlation regulatory-networks relevant-tissue variant-interpretation
Language:Shell 7
boolsi / boolsi
Distributed simulations and analysis of synchronous Boolean networks
boolean-networks systems-biology bioinformatics boolsi mpi python regulatory-networks distributed-simulations
Language:Python 6
arnaudporet / kali
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
therapeutic-targets in-silico biological-networks boolean-networks regulatory-networks drug-discovery computational-biology biological-simulation biological-modeling
Language:Go 5
arnaudporet / pathrider
Finding paths of interest in networks
pathfinding networks network-analysis graphs paths shortest-paths upstream-paths downstream-paths biological-networks computational-biology regulatory-networks signaling-networks signaling-pathways pathways pathway-analysis pathway-tools graph-analysis
Language:Go 3
viktormiok / CoNI
Correlation Guided Network Integration
bipartite-graphs hypergraph-learning network-analysis regulatory-networks
Language:R 2
arnaudporet / konect
Connecting nodes
path-finding graph-traversal regulatory-networks networks graphs graph-algorithms network-analysis pathfinding pathfinder pathfinding-algorithms networks-biology network-algorithms biological-networks computational-biology biological-modeling path-analysis graph-analysis shortest-paths shortest-path-algorithm
Language:Go 0
arnaudporet / smoosim
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
biological-networks boolean-networks continuous-logic fuzzy-logic edge-computation edge-tuning logical-operators computational-biology regulatory-networks biological-modeling biological-simulation networks modeling simulation networks-biology dynamical-systems edge-computing
Language:R 0
arnaudporet / stream
Streaming over networks
biological-modeling biological-networks computational-biology downstream-paths graph-algorithms graph-analysis graph-traversal graphs network-algorithms network-analysis networks networks-biology path-analysis path-finding pathfinder pathfinding pathfinding-algorithms regulatory-networks upstream-paths
Language:Go 0
biopatternsg / biopatternsg
biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.
geneontology uniprot prolog pdb nlp regulatory-networks bioinformatics bioinformatics-pipeline bioinformatics-tool genetics grn java
0
Eandreas1857 / 2023_GGN_Robustness
Code for 2023 "Measuring Robustness of the Gap Gene Network" paper
dynamics regulatory-networks robustness dsgrn gap-gene-network switching-systems
Language:Jupyter Notebook 0
sturkarslan / miner2
Mechanistic Inference of Node-Edge Relationships (MINER)
python cancer-genomics modeling regulatory-networks
Language:R 0
vivekkohar / sRACIPE
sRACIPE for bioconductor
cpp gene gene-circuit-explorer genetics r racipe regulatory-networks simulated-annealing simulation sracipe stochastic
Language:R 0