codon-alignment

There are 0 repository under codon-alignment topic.

drostlab / orthologr
Genome wide orthology inference and dNdS estimation
blast-searches orthology-inference comparative-genomics-studies genomics sequence-alignments blast comparative dnds-estimation codon-alignment r entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Language:R 84
vinuesa / get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
phylogenomics population-genetics phylogenomics-pipeline species-trees markers genomics pipeline phylogenetics phylogenetic-trees codon-alignment maximum-likelihood orthologues species-delimitation microbiology core-genome perl r bash clock-hypothesis recombination
Language:Perl 48
LKremer / MSA_trimmer
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
sequence-alignment msa-trimmer aligned-regions multiple-sequence-alignment trimming trimmer alignment-trimming cds-alignment codon-alignment phylogenetics paml codeml molecular-evolution
Language:Python 16
KseniaJuravel / Positive-Selection-with-HYPHY
Simple code for PS detection, can be used on several files
ubuntu shell positive-selection hyphy genetics codon-alignment bash-script
Language:Shell 6
lyy005 / codon_alignment
Codon-based alignment for CDS sequences
codon-alignment cds cds-sequences codons
Language:Perl 3