genomes-comparison

There are 1 repository under genomes-comparison topic.

• wtsi-hpag / scanPAV

  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

  genomicsstructurevariationgenomes-comparisonbioinformaticsbioinformatics-pipelinegenome-mappingfastapipelinegenome-alignmentsmaltpav-sequences
  Language:C 29

• PalMuc / triangulation

  Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

  phylogenyrevbayesorthologyhomology-searchproteomegenomesgenomes-comparisonfull-genomebash-script
  Language:R 4

• koadman / mauveAligner

  command-line interface software for genome alignment

  genome-alignmentgenomes-comparisonbacterial-genomeshuman-genomes
  Language:C++ 1

• npanuhin / BIOCAD

  Constructing structures of evolutionary genomic relationships based on their local pairwise alignment

  alignment-algorithmsgenomesgenomes-comparison
  Language:C++ 0

• npanuhin / BIOCAD-BWA

  The second part of https://github.com/npanuhin/BIOCAD

  bwagenomesgenomes-comparisonbwa-mem
  Language:Python

• propan2one / OshV-1-molepidemio

  Code of the article that describes the molecular epidemiology analyses of OsHV-1 virus by whole genome sequencing approaches in French shellfish growing areas.

  bioinformaticsbioinformatics-pipelinemetagenomicsvirologyrmolecular-epidemiologyngs-analysisshell-scriptsacademic-projectacademic-papergenomevirus-genomesgenomes-comparisonphylogenetic-analysisanalysis
  Language:Shell