ncbi-genbank

There are 2 repositories under ncbi-genbank topic.

• ropensci / biomartr

  Genomic Data Retrieval with R

  rgenome-retrievalbiomartdatabase-retrievalncbi-genbankgenomicsensembl-serverssequenced-genomesproteomegenomegenome-annotationmetagenomicsmeta-analysisrstatsr-packagepeer-reviewed
  Language:R 206

• CDCgov / seqsender

  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

  genbankgisaidncbi-biosamplesncbi-genbankncbi-srancbi-submissionbioinformatics-pipelinebiosamplegisaid-formatgisaid-uploadgisaid-uploadersraseqsenderncird-idcdc-influenza-divisioncdcncird
  Language:Python 29

• dewshr / NCBI-GenBank-file-parser

  This program can be used to parse the NCBI GenBank file to create a tabulated csv file.

  ncbi-genbankparserbiopythonextract-dataextract-informationreference-datametadatapythonfile-parser
  Language:Python 10

• enviro-lab / ncbi-submit

  A tool to prepare files and run/monitor programmatic submissions to NCBI

  ncbi-biosamplesncbi-genbankncbi-srauploadftpncbisubmission
  Language:Python 2

• michalbukowski / fetch-genomes

  Download genomes from NCBI GenBank FTP site

  genbankgenome-assembliesgenomesncbi-genbankncbi-taxonomy
  Language:Python 1

• NataliaKudr / IGV

  Python and R Scripts for Statistical analysis of available immunogobulin variable genes

  pythonpython3sequencedna-assemblydna-sequencesncbi-blastncbi-genbankncbi-databaseprimatesprimatedatahumanimmunoglobulin
  Language:Python 0

• NCBI-Hackathons / Annotation_Checker

  This pipeline will check assembly and annotations based on gene families.

  genome-assemblyncbincbi-genbankalpha-release
  Language:Python 0

• Bren12 / Exercises-Applying-Bioinformatics

  Computer program developed to investigate one of the viruses that has greatly affected the country, determine and establish phylogenetic relationships, determining patterns and trends, as well as make use of programming tools to establish data analysis.

  rrmdncbi-genbank
  Language:HTML

• dmancilla85 / r-laslo

  Data cleaning and analysis of LASLO results

  rstudiorggplot2data-visualizationncbi-genbankbioconductor-packagerna-structure
  Language:R