biomart

There are 0 repository under biomart topic.

• ropensci / biomartr

  Genomic Data Retrieval with R

  biomartdatabase-retrievalensembl-serversgenomegenome-annotationgenome-retrievalgenomicsmeta-analysismetagenomicsncbi-genbankpeer-reviewedproteomerr-packagerstatssequenced-genomes
  Language:R 217
• biomaRt

  grimbough / biomaRt

  R package providing query functionality to BioMart instances like Ensembl

  bioconductorbiomartensemblr
  Language:R 38

• Matthew-Mosior / fasta-region-inspector

  A bioinformatics tool for analyzing somatic hypermutation

  yaml-configurationhaskellcsv-writerbioinformaticssomatic-hypermutationknuth-morris-prattsbvsmt-solverbiomartxml-generatoreffect-systemeffectfullinear-typesmultithreading
  Language:Haskell 15

• pasted / clinical_variant_database

  Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioinformatics project @ University of Exeter

  biomartgene-annotationsrails-applicationsidekiqdatabasebioinformatics
  Language:Ruby 10

• robertopreste / apybiomart

  Async pythonic interface to Biomart.

  bioinformaticsbiomartasynciopython3
  Language:Python 6

• stevekm / annotate-peaks

  Scripts for .bed file genomic region annotation with various tools

  biomartgenomepeaksannotationannovar
  Language:R 5

• jonathanBieler / BioMart.jl

  Make simple requests to Ensembl BioMart database.

  bioinformaticsbiomartjulialang
  Language:Julia 4

• hexhead / insilico-gene-annotation-app

  In silico Lab Shiny App Demo Gene Annotation for a List of RefSNP IDs

  bioinformaticsbiomartgeneticsmappingrsnps
  Language:R 0

• jromanowska / ensemblfetchR

  R-package: wrapper for {biomaRt} functions

  bioinformaticsbiomartgenesr-packageregulatory-regions
  Language:R 0

• michalbukowski / aml-analysis

  A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)

  acute-myeloid-leukemiabiomartcancer-researchdeseq2ensemblhuman-genomehuman-genomicsinteractive-data-analysisjupyterjupyter-notebookpandaspythonpython3r
  Language:Jupyter Notebook 0

• UBC-iGEM / wheat_RNAseq_analysis

  Transcriptome Analysis of Heat and Drought-Stressed Wheat

  bioinformaticsbiomartdifferential-expressionedgerrna-seq-analysiswheat
  Language:Jupyter Notebook 0

• travis-m-blimkie / HumanIDConverter

  Shiny app that converts human gene IDs to different types using BioMart data.

  biomartshinyrgenesutility
  Language:CSS