homology-search

There are 0 repository under homology-search topic.

• leaemiliepradier / PlasForest

  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes

  plasmidrandom-forest-classifiergenome-analysishomology-searchpipeline
  Language:Python 15

• eggzilla / RNAlien

  RNAlien - unsupervised RNA family model construction

  rnarna-familycovariance-modelhomology-searchhaskellbioinformatics
  Language:Haskell 14

• BIONF / HaMStR

  Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

  homologyhomology-searchorthology-inferenceorthology
  Language:Perl 8
• HYPPO-X

  xperthut / HYPPO-X

  Algebraic topology based header only library to extract insight of complex high dimensional data.

  graphplanttdafilterphenotypespoint-cloudsimplexpersistenthomology-searchinterestingpaths
  Language:HTML 7

• PalMuc / triangulation

  Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

  phylogenyrevbayesorthologyhomology-searchproteomegenomesgenomes-comparisonfull-genomebash-script
  Language:R 4
• KmerGMA.jl

  Qile0317 / KmerGMA.jl

  A kmer-based homology searching tool

  genomicskmerkmer-countingbioinformaticshomologyhomology-search
  Language:Julia 2

• laelbarlow / jackhmmerer

  A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.

  similarity-searchhomology-searchsnakemake-workflowhmmer3jackhmmerevalue-thresholdsprotein-sequences
  Language:Python 0

• PombertLab / MMH

  A simple pipeline to create and search HMM models against reference protein databases.

  annotationhomology-searchhmm
  Language:Perl 0

• biovino1 / SearchEmb

  Searching proteins against a database of embeddings

  homology-searchprotein-language-modelstructure-prediction
  Language:Python