INCATools's repositories
ontology-development-kit
Bootstrap an OBO Library ontology
ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
dead_simple_owl_design_patterns
A simple system for specifying OWL class design patterns for OBO-ish ontologies.
semantic-sql
SQL and SQLite builds of OWL ontologies
dosdp-tools
Utility for working with DOSDP design patterns and OWL ontologies
obographviz
Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
kgcl-rdflib
Tools for working with KGCL
relation-graph
Materialize OWL existential relations
ontobot-change-agent
A GitHub bot for modifying ontology resources.
oakx-grape
Experimental OAK plugin for Grape
ontology-term-usage
determines how an ontology term has been used
table-editor
Lightweight CSV/TSV editor that supports autocomplete and is guided by a DOSDP-aware YAML configuration.
biosample-analysis
analysis of biosamples in INSDC
rdf_matcher
swi rdf_matcher
oakx-plugin-cookiecutter
cookiecutter for OAK plugins
owl_patternizer
generate DOSDP patterns from OWL ontologies
PandaSaurus
Supporting simple queries over ontology annotations in dataframes, using UberGraph queries
pandasaurus_cxg
Ontology enrichment tool for CxG standard AnnData files
oakx-robot
robot plugin for OAK
whelk-paper
Code for Whelk performance analyses
DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 sampling data.
obo-shapes
SHACL and ShEx shapes for validating OBO ontologies