mobiusklein

ms_deisotope

A library for deisotoping and charge state deconvolution of complex mass spectra

glypy

Glycan Analysis and Glycoinformatics Library for Python

ms_peak_picker

A small library to provide peak picking for software processing mass spectrometry data

brainpy

A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations

psims

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

mzdata

glycresoft

An LC-MS/MS glycan and glycopeptide search engine

mzsignal

A Rust library for basic signal processing in mass spectrometry

glycopeptidepy

A library for describing the structure of glycopeptides

mzdeisotope

thermorawfilereader.rs

Reading Thermo RAW files from Rust

cyarray

An exercise in templating fast, resizable arrays for Cython that incur less Python overhead than the array module and expose a pure C representation which does not require any Python interaction.

mzpeaks

A Rust crate for mass spectral peaks

proforma-grammar

pynumpress

A thin, more convenient wrapper around MSNumpress

pyteomics

Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.

casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

chemical_elements

Rust Chemical Composition Library

cpython

The Python programming language

force_directed_layout

A terrible facsimile of the force-directed layout algorithms in d3.js

glycopeptide_feature_learning

glycresoft_app

Web Application and Task Server for GlycReSoft

mass-fragment-index

A Rust implementation of an in-memory mass search index

mzsvg

opendal

Apache OpenDAL: access data freely.

proteome_exchange

A Python client for Proteome Exchange

sage

Proteomics search & quantification so fast that it feels like magic

SpectralLibraryFormat

Spectral Library Format: A standard format to exchange/distribute spectral libraries/archives

svg

Composer and parser for SVG

ThermoRawFileParser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono