biocuration

There are 1 repository under biocuration topic.

• OBOFoundry / OBOFoundry.github.io

  Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

  ontology-registryoboontologysemantic-webbioinformaticslife-sciencesmetadataopen-scienceopen-sourceannotationbiocurationobofoundry
  Language:Python 159
• bioregistry

  biopragmatics / bioregistry

  📮 An integrative registry of biological databases, ontologies, and nomenclatures.

  biopragmaticsbioregistrybiocuration
  Language:Python 105

• biopragmatics / biomappings

  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

  biopragmaticsbiocurationontologysemanticsmappingsbioregistry
  Language:Jupyter Notebook 49

• monarch-initiative / curate-gpt

  LLM-driven curation assist tool (pre-alpha)

  aicurationgptllmmonarchinitiativeobofoundryontogptontologiesontology-toolsbiocuration
  Language:Jupyter Notebook 41
• doctoral-thesis

  cthoyt / doctoral-thesis

  📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

  biological-expression-languageknowledge-graphsknowledge-graph-embeddingsdata-integrationcurationsimulationbiocurationnetworks-biologysystems-biologycomputational-biology
  Language:TeX 29

• jakelever / pgxmine

  Text mining for pharmacogenomic associations for PharmGKB

  text-miningpharmacogenomicsbiocurationpharmgkb
  Language:TeX 26
• civic-v2

  griffithlab / civic-v2

  CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

  cancercancer-genomicsnci-itcrvariantsvariant-curationbiocuration
  Language:TypeScript 19

• GMOD / docker-apollo

  :whale: Apollo 2.X Docker Image

  biocurationgenomeannotationapollobioinformaticsdockerchado
  Language:Shell 10

• monarch-initiative / HpoCaseAnnotator

  Next-generation Biocuration App for annotating cases and PhenoPackets

  biocurationjavajavafxgui
  Language:Java 8

• bel-enrichment / bel-enrichment

  A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL

  biological-expression-languageindrabiocurationnatural-language-processing
  Language:Python 7

• pharmacome / conso

  The Curation of Neurodegeneration Supporting Ontology (CONSO)

  biocurationterminologyontologyneurodegeneration
  Language:Jupyter Notebook 7

• pombase / curation

  PomBase curation

  pombasefission-yeastbiocuration
  7

• biopragmatics / obo-db-ingest

  🗄️ Conversion of biomedical nomenclatures like HGNC to OBO

  biocurationobofoundryontologiesoboobographsobographvizowlrdf
  Language:Python 5

• pharmacome / conib

  Curation of Neurodegeneration in Biological Expression Language (CONIB)

  biological-expression-languagebiocurationnetworks-biology
  Language:Jupyter Notebook 4

• pharmacome / curation

  Guidelines and procedures for curation (manual and semi-automated)

  biological-expression-languagebiocuration
  Language:Python 4

• CoronaWhy / bel4corona

  Code, notebooks, and resources for exploring and analyzing mechanistic knowledge graphs about 'rona

  biological-expression-languagebiocurationbioinformaticsknowledge-graphs
  Language:Jupyter Notebook 3

• cthoyt / cthoyt.github.io

  My personal website, served at https://cthoyt.com

  biological-expression-languagemachine-learningknowledge-graphsknowledge-graph-embeddingsdrug-discoverydrug-repurposingtarget-prioritizationtarget-validationbiocurationontologiesbioinformaticscheminformaticstoxicologywikidataobofoundrydeep-learningproteochemometricsutterancesdrug-synergyartificial-intelligence
  Language:HTML 3

• bel-curation / pybel-git

  Git and continuous integration tools for PyBEL to assist in curating BEL

  biological-expression-languagebiocurationcontinuous-integrationpybel
  Language:Python 1

• lmichan / PFR

  Proyecto de manejo de información digital sobre pruebas de función respiratoria mediante anotación semántica con Hypothes.is

  biomedicalbiomedical-informaticsliterature-reviewneumologybiocurationsemantic-web
  1

• bel-enrichment / results

  An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)

  biocurationsystem-biologybiological-networksindrabioinformaticsnlp-resourcesbiological-expression-language
  Language:Jupyter Notebook 0

• neurommsig / neurommsig-terminology

  Terminologies used in NeuroMMSig and AETIONOMY

  biological-expression-languageontologiesbiocurationterminologies
  0

• pharmacome / semi-automated-curation

  Results from semi-automated curation with INDRA/PyBEL

  biocurationbiological-expression-languageindrasemi-automated-curation
  Language:Python 0

• BioComputingUP / apicuron-issue-tracker

  This repository is dedicated to issue tracking for APICURON, a recognition tool for scientific databases

  biocurationrecognitiontypescriptuser-interfaceweb