Chris Mungall's repositories
json-flattener
Python library for denormalizing nested dicts or json objects to tables and back
linkml-phenopackets
EXPERIMENTAL rendering of phenopackets in linkml
obo-scripts
standalone perl scripts for hacking obo files
bibliomancer
Performs magic on bibliographies
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
rhea-go-llm-analysis
validate-mappings for GO-RHEA
ecosim-ontology
EXPERIMENTAL derivation of ontology from ecosim
hra-vccf
HRA VCCF: Human Reference Atlas - Vasculature Common Coordinate Framework
litellm
Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)
llm
Access large language models from the command-line
llm-openrouter
LLM plugin for models hosted by OpenRouter
PhenopacketLab
An Angular/Springboot web application for the loading, editing, saving of data that follows the Phenopacket Schema
rdf-expressionizer
Translates named classes to equivalent class expressions
reusabledata
The home repository for the (Re)usable Data Project.
simona
Semantic Similarity in Bio-Ontologies