Chris Mungall (cmungall)

cmungall

Geek Repo

Company:Lawrence Berkeley National Laboratory

Location:Berkeley, CA

Home Page:http://berkeleybop.org/people/chris-mungall

Twitter:@chrismungall

Github PK Tool:Github PK Tool


Organizations
berkeleybop
bioperl
CTDbase
EnvironmentOntology
evoldoers
ga4gh
geneontology
globalbioticinteractions
GMOD
linkml
MatchmakerExchange
monarch-initiative
NCATS-Tangerine
obophenotype
owlcollab
owlcs
phenopackets
Planteome
VirtualFlyBrain

Chris Mungall's repositories

venomx

Vector Embedding Named Object Model indeX

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json-flattener

Python library for denormalizing nested dicts or json objects to tables and back

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linkml-phenopackets

EXPERIMENTAL rendering of phenopackets in linkml

obo-scripts

standalone perl scripts for hacking obo files

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bibliomancer

Performs magic on bibliographies

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bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

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curies

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)

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gbwg

Genomic Biodiversity Interest Group

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go-db

TEST bulk loading of go into duckdb

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obolog

Obolog specification (abandoned)

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ucumvert

Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint units

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ecosim-ontology

EXPERIMENTAL derivation of ontology from ecosim

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Exomiser

A Tool to Annotate and Prioritize Exome Variants

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linkml-cfde

EXPERIMENTAL rendering of Common Fund Data Ecocystem as LinkML

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litellm

Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)

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llm

Access large language models from the command-line

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llm-openrouter

LLM plugin for models hosted by OpenRouter

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obi

The Ontology for Biomedical Investigations

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PhenopacketLab

An Angular/Springboot web application for the loading, editing, saving of data that follows the Phenopacket Schema

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rdf-expressionizer

Translates named classes to equivalent class expressions

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reusabledata

The home repository for the (Re)usable Data Project.

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rhea-go-llm-analysis

validate-mappings for GO-RHEA

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simona

Semantic Similarity in Bio-Ontologies

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w3id.org

Website source code for w3id.org

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