cmungall

venomx

Vector Embedding Named Object Model indeX

json-flattener

Python library for denormalizing nested dicts or json objects to tables and back

linkml-phenopackets

EXPERIMENTAL rendering of phenopackets in linkml

obo-scripts

standalone perl scripts for hacking obo files

formal-ontology-analysis

bibliomancer

Performs magic on bibliographies

gpt-reasoning-manuscript

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

curies

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)

gbwg

Genomic Biodiversity Interest Group

go-db

TEST bulk loading of go into duckdb

obolog

Obolog specification (abandoned)

rhea-go-llm-analysis

validate-mappings for GO-RHEA

ucumvert

Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint units

ecosim-ontology

EXPERIMENTAL derivation of ontology from ecosim

Exomiser

A Tool to Annotate and Prioritize Exome Variants

funrun

go-cam-analysis

hoopla

hra-vccf

HRA VCCF: Human Reference Atlas - Vasculature Common Coordinate Framework

litellm

Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)

llm

Access large language models from the command-line

llm-openrouter

LLM plugin for models hosted by OpenRouter

mondo-refactoring

obi

The Ontology for Biomedical Investigations

PhenopacketLab

An Angular/Springboot web application for the loading, editing, saving of data that follows the Phenopacket Schema

rdf-expressionizer

Translates named classes to equivalent class expressions

reusabledata

The home repository for the (Re)usable Data Project.

simona

Semantic Similarity in Bio-Ontologies

w3id.org

Website source code for w3id.org