mzml

There are 0 repository under mzml topic.

• ursgal / ursgal

  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

  proteomicspeptide-identificationpythonmass-spectrometryms-dataproteomics-datamzmlomics
  Language:Python 42
• batmass

  chhh / batmass

  Mass spectrometry data visualization

  mass-spectrometrylc-msvisualizationviewermzmlmzxmlpepxml
  Language:Java 36

• mobiusklein / ms_deisotope

  A library for deisotoping and charge state deconvolution of complex mass spectra

  charge-state-deconvolutiondeisotopingmass-spectrometrymzml
  Language:Python 33

• PNNL-Comp-Mass-Spec / Informed-Proteomics

  Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

  mass-spectrometrymzmlms-datasets
  Language:C# 29

• mobiusklein / psims

  A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

  xml-serializationmzmlmzidentmlobo
  Language:Python 19

• computational-metabolomics / dimspy

  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

  metabolomicsmass-spectrometrydimsuntargeted-metabolomicsrawmzml
  Language:Python 18

• mobiusklein / mzdata

  rustmzmlmass-spectrometry
  Language:Rust 15

• chhh / MSFTBX

  MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)

  mass-spectrometrymzmlmzxmlpepxmlprotxmlmzidentmllc-ms
  Language:Java 11

• wilsontom / msconverteR

  Create .mzML files through the R Console

  dockermass-spectrometrymzmlpwiz
  Language:R 11

• sgibb / MALDIquantForeign

  Import/Export routines for MALDIquant

  mzmlrcsvmsd-filesimportexportmaldimass-spectrometry
  Language:R 10

• novak-jiri / cyclobranch

  A tool for mass spectrometry data analysis.

  mass-spectrometrymass-spectrometry-imagingbioinformaticsbioinformatics-toolpeptidespeptide-identificationmzmlimzmlms-datalc-msmaldi-msidesi-msiimage-fusionimagingmetabolomicsdereplicationde-novo
  Language:C++ 9

• xxao / msread

  Read popular mass spectrometry formats

  pythonmass-spectrometrymzdatamzxmlmzml
  Language:Python 8

• 524D / mzrecal

  Recalibrate Mass Spectrometry data in mzML format

  mass-spectrometryproteomicsrecalibrationgolangmzmlmzidentml
  Language:Go 7

• AlanRace / jimzMLParser

  Java imzML (mass spectrometry imaging) and mzML (mass spectrometry) parser

  imzmljavamzmlmassspectrometryimaging
  Language:Java 6

• idslme / IDSL.MXP

  A light weight and fast parser for reading mzML, mzXML and netCDF data files

  gc-ms-datalc-ms-datamass-spectrometrymzmlmzxmlnetcdfexposomelipidomicsmetabolomicsr
  Language:R 5

• PNNL-Comp-Mass-Spec / PSI-Interface

  C# reader/writer for mzIdentML files (.mzID). Also supports reading mzML files.

  mass-spectrometrymzidentmlmzmlmzml-files
  Language:C# 4

• PNNL-Comp-Mass-Spec / Thermo-FAIMS-to-MzML

  Converts a Thermo .raw file with FAIMS scans into a series of .mzML files, creating one .mzML file for each FAIMS compensation voltage (CV) value.

  mzml
  Language:C# 4

• yufree / mzrtsim

  Raw data and peaks list simulation for GC/LC-MS based data

  metabolomicssimulationmzml
  Language:R 3

• ajmaurais / pymsConvert

  Convert between common MS data formats.

  openmspyopenmsms2mzxmlmzmlproteomicsconverter
  Language:Python 2

• wilsontom / q3ML

  Selective Reaction Monitoring (SRM) Mass Spectrometry (MS) mzML Parser

  mass-spectrometrymrm-msmzmlmzrsrm-msxml2
  Language:R 0

• ajmaurais / scanSelect

  Select specified scans and precursors from a mzML file

  mzmlmzml-filesopenmsproteomicspyopenms
  Language:Python

• BobChallen / Basic-mzml-plotter

  A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value.

  mass-spectrometrymassspectrometrymzmlmzml-filesplotting-in-python
  Language:Python

• wilsontom / slurmwiz

  Convert Mass Spectrometry Files using msconvert, singularity and SLURM

  mass-spectrometrymsconvertmzmlsingularityslurmslurm-workload-manager
  Language:R