Biafra Ahanonu's repositories
imaging_tools
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
geoSatView
geoSatView: Downloads satellite data, crop images, and makes animation video.
GRINjector
Device for injecting gradient-refractive index (GRIN) lens probes into animals.
getOptions
getOptions: clean handling and parsing of variable arguments (varargin) into MATLAB functions.
bahanonu.github.io
For GitHub pages redirects, etc.
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
cdc_statistics
Downloads and plots CDC statistics.
ciatah_utils
File Exchange and related utilities for CIAtah.
FSDA
Flexible Statistics and Data Analysis (FSDA) extends MATLAB for a robust analysis of data sets affected by different sources of heterogeneity. It is open source software licensed under the European Union Public Licence (EUPL). FSDA is a joint project by the University of Parma and the Joint Research Centre of the European Commission.
ggbiplot
A biplot based on ggplot2
GHA-LoC-Badge
Count project Lines of Code & generate a badge for display.
kbroman.github.io
Karl Broman's website
Licenses-for-GitHub
Repository resources for various licenses, with Markdown formatting for inclusion into GitHub's repositories.
matlab_imaging_code
Code related to analyzing calcium imaging videos with Matlab
matlabToolboxCheck
MATLAB function to check whether native toolboxes have licenses available and are installed.
matnwb
A Matlab interface for reading and writing NWB files
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
PatchWarp
Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
sloc
simple tool to count SLOC (source lines of code)
stanford_hpc_matlab
MATLAB code related to testing and running analysis on Stanford's HPC systems.