neuroinformatics

There are 5 repositories under neuroinformatics topic.

AllenInstitute / bmtk
Brain Modeling Toolkit
neuroscience modeling simulation python neural-networks neuroinformatics neuron
Language:Python 274
aces / Loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
loris neuroinformatics neuroimaging database data-sharing science hacktoberfest
Language:PHP 145
RivuletStudio / rivuletpy
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
neuron neuroinformatics morphology image-processing rivulet2-algorithm python tracing curvilinear-coordinates medical-imaging medical-image-processing airways arteries centerline
Language:Python 66
cortex-lab / alyx
Database for experimental neuroscience laboratories
neuroscience django database rest-api experiments neuroinformatics
Language:Python 44
scidash / neuronunit
A package for data-driven validation of neuron and ion channel models using SciUnit
python neuroscience neuron-model neuroinformatics unit-testing computational-neuroscience
Language:Jupyter Notebook 38
Saran-nns / sorn
PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym
associative-networks autonomous-agents bolzmann-machines brain-inspired-computing complex-networks cortical-learning cortical-network hebbian-learning hopfield-network machine-learning neuro-computing neuroinformatics neuroplasticity point-neurons reinforcement-learning reservoir-computing self-organizing-criticality self-organizing-network sorn
Language:Python 35
the-virtual-brain / tvb-recon
Tools for creating full TVB models from individual anatomical scans
neuroscience neuroinformatics mri dwi connectivity simulation
Language:Python 34
raamana / pyradigm
Research data management in biomedical and machine learning applications
machine-learning workflow automation python datastructures userfriendly pandas datascience machine-learning-workflows medical-data biomedical data-structures data-integration neuroscience neuroinformatics neuroimaging
Language:Python 29
magia
tkkarjal / magia
Automated brain PET analysis pipeline
positron-emission-tomography neuroinformatics magia brain
Language:MATLAB 27
nidb
gbook / nidb
NeuroInformatics Database
neuroinformatics-database neuroinformatics neuroimaging neuroscience
Language:C++ 26
school-brainhack / school-brainhack.github.io
Website of the BrainHack School
coding data-science education neuroimaging neuroinformatics psychology neuroai
Language:Jupyter Notebook 23
AllenInstitute / dipde
Numerical solver for coupled population density equations
neuroscience python modeling scientific-computations neuroinformatics
Language:Python 22
PennLINC / CuBIDS
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
neuroimaging neuroimaging-data-science python-package data-curation data-organization neuroscience neuroscience-methods neuroinformatics
Language:Python 21
oist-ncbc / spykesim
Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).
neuroscience spike-trains editdistance neuroinformatics theoretical-neuroscience similarity-measures python
Language:Python 20
mvidaldp / Traumschreiber-mobileEEG
Android app for EEG data visualization and recording with the Traumschreiber BLE device
eeg eeg-signals eeg-analysis eeg-signals-processing eeg-readings eeg-data traumschreiber android android-application android-app ble bluetooth bluetooth-low-energy bluetooth-le bluetooth-controller bluetooth-devices bluetooth-library bluetooth-connection neuroinformatics cognitive-science
Language:Java 18
PavlidisLab / neuroexpresso
:bar_chart: Gene expression in neuroexpresso database
shiny neuroinformatics bioinformatics visualization gene-expression neuroscience neurobiology neuron mancarci-2017 neuroexpresso r
Language:R 18
czh513 / EEG-Inherent-Fuzzy-Entropy
EEG Signal Processing - Entropy
brain-computer-interface neuroinformatics signal-processing
Language:MATLAB 16
danieltudosiu / nmpevqvae
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
deep-learning ignite neuroimaging neuroinformatics vq-vae
Language:Python 14
PavlidisLab / markerGeneProfile
Marker gene profile estimation method used in NeuroExpresso manuscript
mancarci-2017 marker-genes neuroinformatics neurons neuroscience
Language:R 14
Kevinwenya / EEG
脑电波：视觉感受区电位信号(LFP)与视觉刺激之间关系研究（盲信号处理）
neuroinformatics brainwave cognitive-neuroscience
10
PavlidisLab / neuroExpressoAnalysis
Paper at: http://www.eneuro.org/content/4/6/ENEURO.0212-17.2017
bioinformatics bioinformatics-pipeline mancarci-2017 neuroexpresso neuroinformatics neurons neuroscience
Language:R 10
jpdominguez / NAVIS-Tool
Neuromorphic Auditory Visualizer Tool
navis nas cochlea neuromorphic-auditory-sensors neuromorphic-hardware neuromorphic-engineering spiking-neural-networks aedat jaer neuroinformatics neuromorphic
Language:C# 9
boxcutter / oci
Open container images 📦
container docker neuroinformatics podman robotics
Language:Dockerfile 7
SainsburyWellcomeCentre / crabs-exploration
A toolkit for detecting and tracking crabs in the field.
computer-vision computer-vision-tools crabs neuroinformatics object-detection video-processing-pipeline animal-behaviour
Language:Python 7
ziemowit-s / neuronpp
Neuron++ is a library which wraps NEURON (http://www.neuron.yale.edu) with easy to use Python objects.
neuron hoc stdp synapses synaptic-plasticity neuroinformatics neuron-simulator neural-network snn spiking-neural-networks spiking-networks spiking-neurons
Language:AGS Script 7
gustavopamplona / Personode
Personode: a new toolbox for ICA map classification and individualized ROI definition
fmri fmri-data-analysis neuroimaging neuroinformatics neuroscience
Language:MATLAB 6
sbhattacharyay / nims
Neurological Injury Motion Sensing (NIMS) Project
brain-injury motion-capture motion-sensor accelerometer-data prediction-model critical-care neuroinformatics matlab r
Language:R 5
AmigoLab / nmpevqvae
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
deep-learning neuroimaging neuroinformatics vq-vae
Language:Python 4
Romantic-Pumpkin / PDT_fninf
In order to accelerate progress in cohort studies, we proposed a hierarchical neuroscience knowledge base consisting of projects/organizations, multi-modal databases and toolkits, and take the information object in Frontiers in Neuroscience as a example input. Meanwhile, we developed and open sourced the query tool, PDT_fninf , so that researchers can quickly access the knowledge base.
cohort-studies knowledge-base neuroinformatics
Language:Python 4
WizardOfAus / Brain-Computer-Interfaces-Starter-Pack
A Starter Pack Into Getting, Learning and Making BCIs
brain brain-computer-interface neural-networks neuroevolution neuroinformatics
4
intheon / qascade
Qascade: Cascading File Keys
informatics neuroinformatics eeg eeg-data
Language:MATLAB 3
NBCLab / cmhc
MATLAB-based code for correlation matrix based hierarchical clustering
neuroimaging fmri meta-analysis neuroinformatics
Language:MATLAB 3
BlueBrain / atlas-enhancement
Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3
neuroinformatics neuroscience
Language:Jupyter Notebook 2
gtaberna / mrtim
MR-TIM: MR-based head tissue modelling
mri mri-images mri-segmentation tissue-models tissue-classification eeg-analysis neuroinformatics
Language:MATLAB 2
mori-c / neurotech
Introduction to Neurotechnology Coursework @ UofT
eeg eeg-signals-processing neuro-computing neuroinformatics neurotech neurotechx uoft
Language:Jupyter Notebook 2
SamuelHathcock / NeuroCircuitSim
Java application that simulates the simple computational properties of neural circuits. + Genetic algorithm foundations
neuroinformatics
Language:Java 1