deeplabcut
There are 9 repositories under deeplabcut topic.
- DeepLabCut
DeepLabCut / DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Language:Python 4680 lambdaloop / anipose
🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation
Language:Python 355AdaptiveMotorControlLab / AmadeusGPT
We turn natural language descriptions of behaviors into machine-executable code
Language:Python 204SDK for running DeepLabCut on a live video stream
Language:Python 192YttriLab / B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
Language:Python 192Various scripts to support deeplabcut and what to do afterwards!
Language:Jupyter Notebook 145- DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
Language:Jupyter Notebook 139 - DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
Language:Jupyter Notebook 134 amathislab / BUCTD
[ICCV 2023] "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
Language:Python 91GUI to run DeepLabCut on live video feed
Language:Python 58- napari-deeplabcut
a napari plugin for labeling and refining keypoint data within DeepLabCut projects
Language:Python 52 SchwarzNeuroconLab / DeepLabStream
Closed-loop behavioral experiment toolkit using pose estimation of body parts.
Language:Python 52- replicAnt
evo-biomech / replicAnt
replicAnt - generating annotated images of animals in complex environments with Unreal Engine
Language:Python 51 Docker container for running DeepLabCut 2.0, 2.1 (linux support only). Now, DLC main supports 2.2+
Language:Jupyter Notebook 50CMGreenspon / NCams
Toolbox for using multiple cameras from intrinsic calculations to reconstructing kinematics
Language:Python 39- DeepLabCut-core
Headless DeepLabCut (no GUI support)
Language:Python 30 - OmniTrax
FabianPlum / OmniTrax
Deep learning-driven multi animal tracking and pose estimation add-on for Blender
Language:Python 30 DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.
Language:HTML 24A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives
Language:Jupyter Notebook 21articulateinstruments / DeepLabCut-for-Speech-Production
Trained deep neural-net models for estimating articulatory keypoints from midsagittal ultrasound tongue videos and front-view lip camera videos using DeepLabCut. This research is by Wrench, A. and Balch-Tomes, J. (2022) (https://www.mdpi.com/1424-8220/22/3/1133) (https://doi.org/10.3390/s22031133).
Language:Batchfile 20Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.
Language:Python 14An alpha playground for a web-based labeling tool for DLC
Language:Python 14Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.
Language:Python 14benlansdell / ethome
Tools for machine learning of animal behavior
Language:HTML 13sollan / alma
Fully automated (rodent) limb motion analysis toolbox for behavioral analysis with bodypart coordinate data, building upon markerless pose estimation.
Language:Python 13AlexEMG / DLC-Cajal-Course
Course materials for the Modern Methods for Quantifying Behavior Course!
Language:TeX 11[Cell 2024]: Code for Task-driven neural network models predict neural dynamics of proprioception by Marin Vargas* and Bisi* et al.
Language:Jupyter Notebook 11- Language:Python 11
eqs / DeepLabCut-Docker
Dockerfile for DeepLabCut 2.0 (https://github.com/AlexEMG/DeepLabCut)
Language:Dockerfile 8DLClibrary is a lightweight library supporting universal functions for the DeepLabCut ecosystem.
Language:Python 5MeysamAmirsardari / PoseModel
PoseModel: An Open-Source Toolkit for Accurate and Robust Automated Behavioral Latent Embedding
Language:Jupyter Notebook 5michaelrauscher / DLT2DLC
Function for converting DLTdv tracking files into labeled training data for DeepLabCut pose estimation package
Language:MATLAB 5amrhkm / POULTRY-POSE-DEEPLABCUT
A model and video dataset for pose estimation on poultry, a crucial data to have for an automated system that could classify the health state of poultry
Language:Jupyter Notebook 4bf777 / DeepCut2RealTime
Real-time tracking and behavioural reinforcement toolbox for DeepLabCut to accompany Forys, Xiao, Gupta, and Murphy (2020).
Language:Python 4FraTozz / mouseTracking
Collection of code to analyze behavioral data after deeplabcut prediction of mouse selected body parts.
Language:Jupyter Notebook 4stes / deeplabcut-docker
Inofficial docker images for DeepLabCut (experimental)
Language:Shell 4