SWC/GCNU Neuroinformatics Unit's repositories
python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
swc-hpc-pose-estimation
Pose estimation scripts to be run on the SWC HPC cluster
neuroinformatics-unit.github.io
Home website of the Neuroinformatics Unit
slides-behavioural-projects-overview
Slides giving an overview of NIU's behavioural analysis projects.
software-skills
Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
DataSquash
Data compression utilities for systems neuroscience.
derotation
Derotate images acquired via 2-photon or 3-photon calcium imaging
rsp-vision
Analysis and visualization of calcium imaging data from retrosplenial cortex
software-practice-template
A template to generate repositories used to teach SE best practices
slides-templates-atlases
On brain templates & atlases, and how to build them.
course-behavioural-analysis
Materials and slides for the video-based analysis of animal behaviour course.
ood_presentation
Updates on Open OnDemand
show-in-file-manager
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
slides-derotation
Quarto presentation on the derotation project