calcium-imaging-analysis
There are 0 repository under calcium-imaging-analysis topic.
kushalkolar / MESmerize
Platform for Calcium Imaging analysis. DEPRECATED.
Language:Python 58nel-lab / mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Language:Python 51adamshch / GraFT-analysis
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
Language:MATLAB 11colleenjg / OpenScope_CA_Analysis
Analysis code for the OpenScope Credit Assignment project.
Language:Jupyter Notebook 11Mesmerize plugin for the napari viewer
Language:Python 6- cidanLanguage:Python 3
- dunnart-neural-activity
mhmcc / dunnart-neural-activity
Computational analysis of neuronal ensembles and travelling waves in neural activity from the cerebral cortex of the fat-tailed dunnart
Language:Jupyter Notebook 2 CanYing0913 / CaImAn
Fully automated pipeline for calcium imaging analysis. (Description updated on Feb.12 2024)
Language:Jupyter Notebook 0MamiyaA / Mamiya_etal_2023_Proprioceptor_selectivity_topographic_maps_Analysis_code
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Language:Jupyter Notebook 0RodrigoSandon / LBGN
Supervisors: Dr. Patrick Piantadosi and Dr. Andrew Holmes
Language:Jupyter Notebook 0ronihogri / Calcium-signal-preprocessing-and-analysis-with-Spike2
Spike2 script for handling calcium imaging data. The program cleans the data, visualizes it, and extracts features of the detected calcium signals. It creates two output files: a txt file holding the clean data values for all cells, and a csv file containing a summary of the results obtained.
0SharifAmit / 4SM
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
Language:Python 0tele-med / suite2p_matlab
CalciumImaging analysis matlab pipeline for suite2p outputs
Language:MATLAB 0tuthill-lab / Mamiya_2023
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Language:Jupyter Notebook 0Nazzari97 / Cell-Culture-Calcium-Activity-Identification-During-Wound-Healing
This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.
Language:MATLABnsourlos / manual_CACS_to_REDCap
Add manual Calcium scores measurements to REDCap
Language:Jupyter Notebook
