relative-abundances

There are 0 repository under relative-abundances topic.

• Russel88 / DAtest

  Compare different differential abundance and expression methods

  microbiomernaseqrelative-abundancescompare-methodsdifferential-abundance-methodsotumarker-gene-analysis16sproteomicsmetabolomicsmetagenomicsdifferential-expressionaucfalse-positive-control
  Language:R 48
• RawHash

  CMU-SAFARI / RawHash

  RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)

  bioinformaticscontaminationevent-detectiongenome-analysishash-tablesnanoporenanopore-analysis-pipelinenanopore-datananopore-minionnanopore-readsnanopore-sequencingraw-signalread-mappingrelative-abundancesseedingsegmentationraw-nanopore-signal-analysisrawhash
  Language:C 39

• jaeyunsung / GMHI_2020

  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.

  stool-metagenomegut-microbiomemetagenome-samplesrelative-abundanceshealth-scarce-species
  Language:R 30

• oschakoory / RiboTaxa

  RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.

  metagenomics16s-rrnabioinformaticsmicrobial-communitiessequence-reconstructionmicrobiotarelative-abundances
  Language:Shell 6

• iliapopov17 / The-shadow-of-HIV

  Repository for course project in Bioinformatics Institute 2023-2024

  snakemakealpha-diversitybeta-diversitydifferential-abundance-analysisdnahivrelative-abundancesbowtie2kraken2maaslin2samtoolsiontorrent
  Language:Jupyter Notebook 3