haplotype-assembly

There are 0 repository under haplotype-assembly topic.

• baozg / Potato_C88

  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning

  haplotype-assembly
  Language:Python 19

• PlantandFoodResearch / MCHap

  Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

  dna-sequenceshaplotypeshaplotype-assemblyhaplotype-blocksarraynumpybayesian-inferencepolyploidypolyploid-genotypinggenotyping
  Language:Python 18

• everestial / phase-extender

  A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

  haplotypesphase-extenderhaplotype-extensionphase-haplotypesreference-haplotype-panelhaplotype-blockshaplotype-assemblygenome-phasing
  Language:Jupyter Notebook 13

• bodeolukolu / GBSapp

  Automated Pipeline for Variant/Haplotype Calling and Filtering

  bioinformaticsgenomicshaplotype-assemblyngspolyploid-genotypingsequencingdosage-callingmulti-node-paralellism
  Language:Shell 7

• WuLoli / GAEseq

  GAEseq: A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

  aaai2020deep-learninggraph-neural-networkshaplotype-assemblypythonviral-quasispecies-reconstruction
  Language:C++ 7

• andrea-tango / GenHap

  A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly

  haplotype-assemblysnpsgenetic-algorithmrochehaplotypesmulticoremaster-slave
  Language:C++ 3

• STTLab / HIV-64148

  HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.

  genomic-surveillancehaplotype-assemblyhivnanopore-analysis-pipelineviral-genomics
  Language:Python 1